Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Rhodopseudomonas palustris CGA009

 Score =  218 bits (555), Expect = 1e-61
 Identities = 114/282 (40%), Positives = 165/282 (58%), Gaps = 8/282 (2%)

Query: 2   LSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGEY 61
           ++YRH+FHAGN ADV+KH+V   IL  L  K   F   DTH+G G YDLT E + + GE+
Sbjct: 1   MNYRHAFHAGNFADVIKHLVLVRILTYLHDKPAAFRVVDTHAGAGLYDLTSEEARRGGEW 60

Query: 62  KQGIARIWQ---QDNIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVLTE 118
             GIAR+ Q    D   A +  YLD +R  N    +  YPGSP +ARA LR QD +V  E
Sbjct: 61  ATGIARVLQARFSDEAYALIAPYLDIVRAFNPQRDMTAYPGSPLIARALLRPQDSLVACE 120

Query: 119 LHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVVR 178
           L P     L      D Q  +   DG+  L A +PP+ERRGLVLIDPP+E   E+  +  
Sbjct: 121 LEPVARKQLIAALRHDPQGRVVDLDGWTGLTAYVPPKERRGLVLIDPPFERKDEFEQMAA 180

Query: 179 AIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIR----KILQIELGVAPDTNERG 234
             A ++ +W TG+Y +WYPV NR   + +   + G        K L++E  VAP  ++  
Sbjct: 181 KFAAAHAKWPTGVYLLWYPVKNRRATEALAAAVAGTAAAGGEGKCLRLEFSVAPQQSDGP 240

Query: 235 MTASGMIVINPPWTLESQMQTILPFLKQAIA-PATGHYKVEW 275
           +T++G++++NPPWTL  +++T+LP L++ +     G Y++E+
Sbjct: 241 LTSTGLLIVNPPWTLADELRTVLPELERPLGLGGVGRYRLEF 282



 Score = 30.8 bits (68), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 147 RLKASLPPQER------RGLVLIDPPYELAKEYRDVVRAIAQSYKRWATGIYAIWYP 197
           RL+ S+ PQ+        GL++++PP+ LA E R V+  + +       G Y + +P
Sbjct: 227 RLEFSVAPQQSDGPLTSTGLLIVNPPWTLADELRTVLPELERPLGLGGVGRYRLEFP 283