Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  275 bits (704), Expect = 6e-79
 Identities = 127/279 (45%), Positives = 188/279 (67%)

Query: 1   MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGE 60
           MLSYRH +HAGN+ADVLKH +    L  + +K KP VY DTH+G G Y L+ E+++KTGE
Sbjct: 1   MLSYRHGYHAGNYADVLKHSILLQTLKLMHKKNKPMVYIDTHAGAGGYALSDEFAQKTGE 60

Query: 61  YKQGIARIWQQDNIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVLTELH 120
           Y +G+A++W + ++P  L  Y+  I+  N  + L  YPGSP     +LR+ DRMVL ELH
Sbjct: 61  YLEGVAKLWDKQDLPEALSQYVSDIKHFNGSDELELYPGSPAFVDMNLRDNDRMVLHELH 120

Query: 121 PSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVVRAI 180
            +D+ LLE++   D+Q+ + K DG   L+A++PP ERRG++LIDP YE+  +Y++V +A+
Sbjct: 121 GTDHQLLEEQLGSDKQIKVIKGDGLKGLQAAVPPLERRGVILIDPSYEMKSDYQEVAKAV 180

Query: 181 AQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGMTASGM 240
            +++K++ATG++ IWYPVV R   + M E L+   I++ L+IE  + PD+ E GMTA+G+
Sbjct: 181 IKAHKKFATGVFMIWYPVVQREQTEAMFELLKQSGIKRQLRIEQAIKPDSEEFGMTAAGL 240

Query: 241 IVINPPWTLESQMQTILPFLKQAIAPATGHYKVEWVVPE 279
            VINPPW L+   +T L +L   +    GH +V W V E
Sbjct: 241 WVINPPWQLDEIAETTLEYLDPLLNQGGGHVQVTWEVGE 279