Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  278 bits (711), Expect = 9e-80
 Identities = 131/281 (46%), Positives = 189/281 (67%), Gaps = 2/281 (0%)

Query: 1   MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGE 60
           MLSYRH +HAGN+ADVLKH +    L  + +K+KP VY DTH+G G Y LT E+++KTGE
Sbjct: 1   MLSYRHGYHAGNYADVLKHAMLLQTLQLMHKKDKPLVYIDTHAGAGGYALTDEFAQKTGE 60

Query: 61  YKQGIARIWQQDNIPAELDSYLDAIRQLNQG--ETLRYYPGSPRVARAHLREQDRMVLTE 118
           Y  G+A++W + ++P  L  Y+DA+R  N+   E L +YPGSP      L  +DRMVL E
Sbjct: 61  YLDGVAKLWNKTDLPKSLQDYVDAVRHFNEDNPEELNFYPGSPAFIDMDLGPKDRMVLHE 120

Query: 119 LHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVVR 178
           LH +D+ LL++ F +D+QV + K DG   L A++PP ERR LVL+DP YE+  +Y+ V  
Sbjct: 121 LHGTDHLLLDEYFEQDKQVKVIKGDGLKGLIAAVPPLERRALVLVDPSYEIKTDYQTVAD 180

Query: 179 AIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGMTAS 238
            + +++KR+ATG++ +WYPVVNR   ++ML  L    I++ L+IE  + PD+NE GMTA+
Sbjct: 181 TLIKAHKRFATGVFMLWYPVVNRAQTEEMLSRLANSGIKRQLRIEQAIKPDSNEFGMTAA 240

Query: 239 GMIVINPPWTLESQMQTILPFLKQAIAPATGHYKVEWVVPE 279
           G+ VINPPW L+     ++ +L + +  A GH  V+W V E
Sbjct: 241 GLWVINPPWQLDEIANEMVDYLGKTLGQADGHVSVKWEVGE 281