Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., external DNA uptake/catabolism protein from Caulobacter crescentus NA1000

 Score =  132 bits (331), Expect = 1e-35
 Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 2/249 (0%)

Query: 2   LSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGEY 61
           ++YRH+FHAGN AD+ KH +   +L++LQ+K       DTH+G G YDL  E + ++GE 
Sbjct: 1   MNYRHAFHAGNFADLHKHAILLAMLSALQEKSPALAVIDTHAGAGGYDLAGEMARRSGEA 60

Query: 62  KQGIARIWQQDNIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVLTELHP 121
           + GI R+    + PA     L+AI Q+N G+    YPGSPR+    LR  DR V  EL  
Sbjct: 61  QAGIFRLKAAADAPAVFQPLLNAITQMNGGKDGDLYPGSPRLMARALRGADRYVGCELRD 120

Query: 122 SDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVVRAIA 181
            D  LL +           + DGF         +  R  ++IDPP+E   +Y  +V    
Sbjct: 121 DDADLLRKTLAPCANARALQADGFDTAVKD-AGKGGRAFIVIDPPFERPDDYDRIVATTR 179

Query: 182 QSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGMTASGMI 241
               R      AIW P+ +    D  L  ++ +    +L  EL + P T+   M    M+
Sbjct: 180 AVLARAPDAALAIWLPIKDLETFDAFLRAMETV-TSDLLVAELRLRPLTDPMKMNGCAMV 238

Query: 242 VINPPWTLE 250
           +I  P ++E
Sbjct: 239 MIGAPPSVE 247