Pairwise Alignments

Query, 404 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

 Score = 55.5 bits (132), Expect = 3e-12
 Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 24/163 (14%)

Query: 218 IQSGLRVEEACTFPFSIVEMPNPHIHRYEVEIGIHNGVHTKFNKTRKVEIPNQLMRKMYD 277
           +QSGLR+ E   FP  + ++P  ++  +     +      K  K R V IPN+L+ K + 
Sbjct: 197 LQSGLRISEVVGFP--LKDLPEVNLRGHSTPARVIG----KGGKARLVLIPNKLLVKFWQ 250

Query: 278 YSVSERRLKREK-----KTDGVNKTLLLNNLGNPLCSNNIQQHFRRLRHHIQNKHNIVFS 332
           Y   +R+   EK       D V+  L L+  G  L +N I++ F R    +  K      
Sbjct: 251 YVDFDRQRVVEKIESIAGNDVVDDVLFLSEKGRRLTANWIEKLFTRASERLGVK------ 304

Query: 333 HRTHDLRATYGTYRLDSLLDHLPVGDALALIMGWMGHKDDKTT 375
              H LR TYGTY       H  +   LA +   MGH ++ TT
Sbjct: 305 TVPHVLRHTYGTY-------HYLLNKDLAGLANLMGHSNENTT 340