Pairwise Alignments

Query, 404 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., site-specific recombinase XerD from Dechlorosoma suillum PS

 Score = 64.3 bits (155), Expect = 6e-15
 Identities = 77/315 (24%), Positives = 130/315 (41%), Gaps = 34/315 (10%)

Query: 71  LKRYWQFLETNNYSWDNFPANDYLKPTYRFRNDDLLKAARSGEIAFSTASMYILHVIKFY 130
           L  ++ FLET   SWD   +         +R+  L +  R      ST +  +  V  FY
Sbjct: 61  LYEFFSFLETIEISWDRIRSTHLAA----WRDSMLSRGCRR-----STVNHRVGAVSNFY 111

Query: 131 EWAAHERFITFTEENKPFNYQIVHIAN-SGMMSHNNPRFT-VRSTDLRIRKPARNEQQKL 188
           +WA   + I+    + PF  + V ++   G ++H + +   V++ +L++R  +   Q K 
Sbjct: 112 KWALRSQKIS----SLPFYMEDVRVSRPKGFLAHIDAKGNQVQANELKLR--SFKPQPKF 165

Query: 189 NPLSQQELLFFADCLKECSDEFIIHQLLQIQSGLRVEEACTFPFSIVEMPNPHIHRYEVE 248
             L+  +   F   L    +  + +  L   SGLR EE  T     +  P+ H     + 
Sbjct: 166 --LTADKARLFVTALTPRRNRLMAY--LMWFSGLRREEVATLELEDIPNPSGHPPGKPLA 221

Query: 249 IGIHNGVHTKFNKTRKVEIPNQLMRKMYDYSVSER----RLKREKKTDGVNKTLLLNNLG 304
           + +     TK  K R V +P  L  ++++Y + ER    +  R++     +  + L   G
Sbjct: 222 MTLRT---TKGRKPRWVSVPYDLAVQLWNYVIYERSSLAKRYRKRHVGPESNRVFLTAYG 278

Query: 305 NPLCSNNIQQHFRRLRHHIQNKHNIVFSHRTHDLRATYGTYRLDSLLDHLPVGDALALIM 364
            P+    I   F++       K  I  +   H LR TYGTY    +        AL  +M
Sbjct: 279 EPISLGGINNAFKKA----SEKSGIKCT--PHMLRHTYGTYEFIRMSQFKSKESALFWVM 332

Query: 365 GWMGHKDDKTTWKYL 379
             MGH    TT  Y+
Sbjct: 333 ERMGHSSLATTQIYI 347