Pairwise Alignments

Query, 404 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., integrase from Burkholderia phytofirmans PsJN

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 97/382 (25%), Positives = 150/382 (39%), Gaps = 54/382 (14%)

Query: 33  GFPTFYSKDHEYLLPVN---LWFNYLVNIRKAVDIT--ASVRALKRYWQFLETNNYSWDN 87
           G P     D E++L VN   LW   L N       T  +   +L  ++ +L  N  +WD+
Sbjct: 19  GIPFLCEDDMEFVLEVNDYLLWIA-LENASTGSPATWKSHAESLYDFFSWLRVNQLAWDS 77

Query: 88  FPAN----DYLKPTYRFRNDDL-LKAARSG--EIAFSTASMYILHVIKFYEWAAHE---- 136
            P      + +     +RN  L L   R+G  +I  ST    + H++ FY+WAA      
Sbjct: 78  RPQKGRQGEEITTLAIYRNWSLDLSDPRTGRQQIQASTVRKRLTHIMAFYKWAARRGRID 137

Query: 137 ------RFITFTEENKPFNYQIVHIANSGMMSHNNPRFTVRSTDLRIRKPARNEQQKLNP 190
                 R   F  +  P  Y+  H     ++  +N R TVR              +KL P
Sbjct: 138 FIPWETRGYVFAPQVHPDMYR--HARAGRVVERDNVRPTVR--------------KKLIP 181

Query: 191 LSQQELLFFADC---LKECSDEFI-IHQLLQIQSGLRVEEACTFPFSIVEMPNPHIHRYE 246
           L     L    C   LK C+   + +   L +Q+GLR  E  TFP   V  P+P      
Sbjct: 182 L-----LTVNQCRALLKACTTGTLQLMTKLMLQTGLRNAECRTFPKKYVFDPSPAARNRR 236

Query: 247 VEIGIHNG-VHTKFNKTRKVEIPNQLMRKMYDYSVSERRLKREKK----TDGVNKTLLLN 301
           + I +    +  K    R+V +   LM+ ++DY        R +     T   +  L LN
Sbjct: 237 IPINLDPADMELKNGNARRVYVSWHLMKDLFDYLNFGEGASRSRAFFNITGQFSPVLFLN 296

Query: 302 NLGNPLCSNNIQQHFRRLRHHIQNKHNIV-FSHRTHDLRATYGTYRLDSLLDHLPVGDAL 360
             G       +   +R+L         ++ F    H LR T+ T  L +    + +G AL
Sbjct: 297 QGGTRWSEKGLNNAYRKLWAPPTLSSPVLDFRVTPHMLRHTFATCELFAESQRVNLGHAL 356

Query: 361 ALIMGWMGHKDDKTTWKYLRYL 382
           A +   +GH    TT +Y+  L
Sbjct: 357 AWVRDRLGHSSISTTTRYVHCL 378