Pairwise Alignments

Query, 404 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., integrase from Burkholderia phytofirmans PsJN

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 91/399 (22%), Positives = 156/399 (39%), Gaps = 55/399 (13%)

Query: 34  FPTFYSKDHEYLLPVNLWFNYLV------NIRKAVDITASVRALKRYWQFLETNNYSWDN 87
           FP     D       NLW   ++      N+     I   + A +RY   L+     W  
Sbjct: 66  FPVVRLADGAPWAEANLWLIDMMESKSSPNMLTFASIADDLVAFRRY---LDDEGVDWLT 122

Query: 88  FPANDYLKPTYRFRNDDLLKAARSGEIAFSTASMYILHVIKFYEWAAHERFITFTEENKP 147
           FPAN   +PTYR+ +  +  A ++GE++   A   +  V++FY W   E    F   N P
Sbjct: 123 FPANKRQRPTYRY-SASIRLAVQAGELSPGVARRRMGAVVRFYRWLMAE--AGFKPANAP 179

Query: 148 F--NYQIVHIANSGMMSHNNPRFTVRSTDLRIRKPARNEQ--------QKLNPLSQQELL 197
           +  + + +   +    S       V++TDL I     ++          +L PL   E  
Sbjct: 180 WVESGRFIEFRDQKGFSST---IEVKTTDLSISGRRADDPWDDHIQDGGRLRPLPSSEQS 236

Query: 198 FFADCLKEC-SDEFIIHQLLQIQSGLRVEEACTFPFSIVEMPNPHIHRYEVEI--GIHNG 254
              + L    + E  +  L  + +G R++   T     V       H  ++ +  G   G
Sbjct: 237 VLLESLATLGNSEMTLVHLFALLTGARIQTVLTVRAKHVMRKPGEFHGGDIRLACGPGTG 296

Query: 255 VHTKFNKTRKVEIPNQLMRKMYDYSVSERRLKREKKTDG---VNKTLLLNNLGNPLCSN- 310
           + TK +    + +P     ++Y Y  S+R  KR +  DG    ++ L L++ G PL  + 
Sbjct: 297 IDTKGDVKGVLHLPRGFYERLYIYVHSDRARKRRQLADGGDHFDQPLFLSHRGAPLYEDR 356

Query: 311 ----------NIQQHFR---RLRHHIQNK---------HNIVFSHRTHDLRATYGTYRLD 348
                      +++H +    +R  I+++          N  +    HDLRAT+G   +D
Sbjct: 357 GSRGPLSTGPQVRRHVKTGQAVRQFIRDELLPMMRVQLGNPRYEFSYHDLRATFGLNTVD 416

Query: 349 SL-LDHLPVGDALALIMGWMGHKDDKTTWKYLRYLRKEK 386
           ++         AL  +   M H    TT +YL Y    K
Sbjct: 417 AMTASKTSYTRALDQLRQLMWHVQPSTTERYLAYRENRK 455