Pairwise Alignments

Query, 404 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  181 bits (458), Expect = 5e-50
 Identities = 110/343 (32%), Positives = 189/343 (55%), Gaps = 13/343 (3%)

Query: 47  PVNLWFNYLVNIRKAVDITASVRALKRYWQFLETNNYSWDNFPANDYLKPTYRFRNDDLL 106
           P  L+  +  +  +A       +AL  Y++FL  NN ++  FP +   K T+RF  D L+
Sbjct: 58  PACLYLYWKKDEEQAKSTATDAKALLLYFRFLHQNNLNYWQFPHSKSRKQTFRFA-DFLV 116

Query: 107 KAARSGEIAFSTASMYILHVIKFYEWAAHERFITFTEENKPFNYQIVHIANSGMMSHNNP 166
            A +S +IA STA  Y+  ++ FY++      I F+E NKPF+++IV +  SGM++H   
Sbjct: 117 SAIQSDDIAISTAKTYLRVIVNFYKFLGRNNLIEFSERNKPFDFEIVSLRQSGMLAHTQR 176

Query: 167 RFTVRSTDLRIRKP---ARNEQQKLNPLSQQELLFFADCLKECSDEFIIHQLLQIQSGLR 223
             TV++T+L  + P   A++  +KL+PL+Q+ L  F D L    ++  +   + + +G+R
Sbjct: 177 VITVQTTNLMKKLPKEQAKHISRKLSPLTQEHLSAFLDTLSTIPEDKALVFEVALATGMR 236

Query: 224 VEEACTFPFSIVEMPNPHIHRYEVEIGIHNGVHTKFNKTRKVEIPNQLMRKMYDY---SV 280
           ++E  T P SI+  P  + +   + IG  NGV TKF+K R VE    LM K++ Y   SV
Sbjct: 237 LQEVLTIPESIIFNPE-NTYPIPISIGPQNGVKTKFSKQRYVEFSASLMLKLHQYMWSSV 295

Query: 281 SERRLKREKKTDGVNKTLLLNNLGNPLCSNNIQQHFRRLRHHIQNKHNIVFSHRTHDLRA 340
            +R + + K  +G    L ++  G P  +N I++ F  +R  +  ++ + F++  HDLR+
Sbjct: 296 RQRYVSKGKNNEG---KLFISRQGTPFNANTIEKSFSDIRRVLSQRY-MDFNYAIHDLRS 351

Query: 341 TYGTYRLDSLLDHL-PVGDALALIMGWMGHKDDKTTWKYLRYL 382
           TY TY L  L +    +  A +++   MGH    +T+KY+ ++
Sbjct: 352 TYATYTLHRLWEEKGSLRAAASILQELMGHNSFTSTFKYVEFI 394