Pairwise Alignments

Query, 703 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 627 a.a., integrase from Burkholderia phytofirmans PsJN

 Score = 87.4 bits (215), Expect = 2e-21
 Identities = 111/504 (22%), Positives = 189/504 (37%), Gaps = 72/504 (14%)

Query: 35  DDVVVTKNFDGSPNSHFGDEEWDFRAYL----DARIVYKKRIV--FSKIVSDDLAREMKL 88
           DD VVT++  G+  S FGD+ WD  AY        + ++  +    ++ +S+   R+ K 
Sbjct: 20  DDTVVTRDKAGNAVSLFGDDAWDIGAYAIGPRSTGLHFRGHLPDGVTRALSEATTRQWKQ 79

Query: 89  ICFCWLYIAGHHRKGAVIKPSTLIARFSKLSILYKFIDSKGFQSINSLSSEIVFSEFCEY 148
           I    +Y   H     V   STL AR   L     F   +       LS+  +  ++   
Sbjct: 80  I----MYFLMHEATDMVPASSTLQARSVYLREFAFFAAERQLTLYEGLSNVPIVLDYVAQ 135

Query: 149 L----KGQNYSSGQVE----GIYNALMHVKKAARYLPIQFEIPQGRTQCKFGREITGRLY 200
                K Q   S  V+    G+    + V  A  + P+     Q                
Sbjct: 136 AGMERKAQRLHSILVQLHRLGVGTTGLCVPLAQLHKPLLDRFAQRAEYA----------- 184

Query: 201 EGKNQFYAIPTRLMEKIYRYCFDVVETYHPYKEEIHELLYDMRQNYEEGKRRVDDKIQSG 260
               Q+  IPTR    IY++     E         H+L                     G
Sbjct: 185 ----QYPVIPTR----IYQHFLSTCE---------HDL---------------------G 206

Query: 261 IWQWISEESNEYRVEVNKHQPASYSSIIDAHIKDTHLESLLPKSALRIQGTIIEIQTICF 320
           + + +++  ++Y   V     A  +  + A +    +      S   +   +  I+ +C 
Sbjct: 207 VAEDVADILSDYLARVY----AGENPDVSAAVATNAVHFGCKDSPYVVSSLVASIRALCQ 262

Query: 321 IVCGALTGMRRSELFCLHSNSFKEKEMYGKKYYTLQSEQHKFSQGRGKMAEWVTTKFTQK 380
           +V  A TGMR  E   L  +   E  + G  +YT++    K S GR + A WVT+    +
Sbjct: 263 LVILAFTGMRAREAENLPYDCLSETRLDGVTHYTIEGVTTKLSGGRPRRARWVTSPLAAR 322

Query: 381 AIELAEAISRYMRIQLLEDDDPMSVHNSSCLWLGQGRKSQKPIIRQDNNMRTHFLKICEK 440
           A+ LA+ +S              S   S  L+   G +      R  + +        E+
Sbjct: 323 AVRLAQRLSGEAHRAHGAPSYAESTDGSHLLFCRMGLRYGYVANRGASTLHLDVEAFRER 382

Query: 441 AGALITEDDLDEFRVINPNREPNNADERLKVGNVWPLTTHQLRRTFAVFSKRHNLCHDIA 500
               IT +D+ E + ++ +R   + + +   G  WP T HQLRRT A+++ R  L     
Sbjct: 383 VFPTITVEDIAELKRVDMHRAWED-EPKYAPGQQWPFTRHQLRRTLALYAHRSGLVTLPT 441

Query: 501 IKEQFKHLDLPTTEWYGEGGLASK 524
           +K Q +H+    + +Y  G   +K
Sbjct: 442 LKRQLQHITQEMSMYYARGSAFAK 465