Pairwise Alignments

Query, 703 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 694 a.a., phage integrase family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 142/710 (20%), Positives = 260/710 (36%), Gaps = 109/710 (15%)

Query: 20  KNIVQLYSDGKLKKLDDVVVTKNFDGSPNSHFGDEEWDFRAYLDARIVYKKRIVFSK-IV 78
           + ++ L   G   +L+   V+   +GSP S F D+ W+F  Y     +      F    +
Sbjct: 19  ERLLYLAQHGLWTELEQKAVSFKQNGSPISIFNDDVWNFAPYKVGTEIALLNFQFPDGAM 78

Query: 79  SDDLAREMKLICFCWLYIAGHHRKGAVIKPSTLIARFSKLSILYKFIDSKGFQSINSLSS 138
                +E+K++   ++Y + H  +   I+      +   +S+    I S    +I +L S
Sbjct: 79  YPRFVQELKVVALAYIYHSRHAYRIGTIRSKIACLKRLAISLYQNEIFSFDGLTIETLKS 138

Query: 139 EIVFSEFCEYLKGQNYSSGQVE-GIYNALMHVKKAARYLPIQFEIPQGRTQCKFGREITG 197
                      K   YS  +V+ G  N+L  +     +LP      +  T  K       
Sbjct: 139 ---------LTKKNLYSPREVDVGPINSLNDL---GDFLPFDVNFFERLTLQKL------ 180

Query: 198 RLYEG-KNQFYAIPTRLMEKIYRYCFDVVETYHPYKEEIHELLYDMRQNYEEGKRRVDDK 256
           R+ +  K Q   IP R+         + V+ +H YK+++ + +  + +  +    R+   
Sbjct: 181 RVKQPLKEQHPVIPLRIYLAALNSYTNEVQLWHKYKDQLEQAVQAVFEYEQTQANRMLQN 240

Query: 257 IQSG---IWQWISEESNEYRVEVNKHQPASYSSIIDAHIKD-------------THLESL 300
           +++G   + Q  +    +Y   +N+ +  S   +     +              T     
Sbjct: 241 LRNGTCSVGQVFNNADKKYFRFINELKKHSVPLVDHGESEQWDILWNQCEPVIRTDFYEP 300

Query: 301 LPKSALRIQG--TIIEIQTICFIVCG-------ALTGMRRSELFCLHSNSFKEK-EMYGK 350
           LP   +  Q   +  EI+  C I+          L+GMR +EL  +      +   + G 
Sbjct: 301 LPAITIGNQQFFSAHEIKEFCRILDSKCRYLVLCLSGMRSNELLQITPEFGAQVITLDGI 360

Query: 351 KYYTLQSEQHKFSQG-RGKMAEWVTTKFTQKAIELAEAISRYMRIQLLEDDDPMSVHNSS 409
             +   + Q K + G +G+   +VTT+    A EL  AI+R +R                
Sbjct: 361 DIHLFHTRQQKITLGYQGQNDVYVTTRNGHIAYELLNAINRPVR---------------- 404

Query: 410 CLWLGQGRKSQKPIIRQDNNMRT-----------HFLKIC------EKAGALITEDDLDE 452
           C     GRK    ++    N RT           H L         E+   ++  DD++ 
Sbjct: 405 CWHRANGRKEW--LLNSFKNFRTPKSVNSSTRVLHSLSKLFTTQKEEQLSVVLNSDDIEM 462

Query: 453 FRVINPNREPNNADERLKVGNVWPLTTHQLRRTFAVFSKRHNLCHDIAIKEQFKHLDLPT 512
            R  +P +  N       +G  W LT HQLRR+ A +     L     +K+QF H  +  
Sbjct: 463 LRRSDPEKTFN-------IGERWHLTPHQLRRSLAYYLVGMQLADYPQLKQQFSHYSIAM 515

Query: 513 TEWYGEGGLASKIKALQIDTELQSFLNDV-IQESTTQKIHEWYKGCDSGQLMGHMAGSIN 571
           T +Y     AS  + +  D E +       +    T K+    +G   G   G    S N
Sbjct: 516 TMYYARN--ASSFRKMYHDLEKERLRQQAKLYSDLTTKV---MQGVKLGGGQGKHMFSEN 570

Query: 572 KNRISLHKKYKSWDAINEHVKAGRLTLVGTLHSYCMAGYECQMHKVSSPANCMSCENQLI 631
                +   Y       + +K+GR  +           + C M      + C  C+  +I
Sbjct: 571 FVDRDISPAY-----FEKEIKSGRKHIHAIAPGMYCINHTCSMRIGIDLSECTDCDWSII 625

Query: 632 DK---EKAENWDKRYQWVCKQVTDMEAIGSLTSSMYSHFITQIRAAEKVL 678
           +     KA   +         +  ++    L++ + +    +IRAAEK++
Sbjct: 626 ESVAYAKAARSES-----INILETLKLRNELSADIAAFHTVRIRAAEKIM 670