Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., peptide transporter from Pseudomonas fluorescens FW300-N2E3

 Score =  213 bits (541), Expect = 6e-60
 Identities = 115/302 (38%), Positives = 180/302 (59%), Gaps = 19/302 (6%)

Query: 8   PSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAEL 67
           PS ++ F Q+     F ++K A++     +L +  AI AP +AP NP +     ++    
Sbjct: 17  PSPYKEFWQA-----FSKNKGAVAGLLFMLLVIFCAIFAPWVAPHNPSEQFRDFLLT--- 68

Query: 68  PPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFG 127
           PP+W+  G   FLLGTDE GRD+ S +++GSRLSL IG  +V + L  GI++GL AG+F 
Sbjct: 69  PPAWLANGQMQFLLGTDELGRDLLSRLIHGSRLSLLIGLSSVVMSLIPGILLGLFAGFFP 128

Query: 128 GRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYA 187
             +   +MR  DI L+  ++++A+ + AI              ++  V+ I V   P Y 
Sbjct: 129 RLLGPTIMRLMDIMLALPSLLLAVAIVAILGPG----------LINTVIAIAVVSLPAYV 178

Query: 188 RTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAAL 247
           R  RA+V+ E  ++YV AAR+ G   PR+MF  +LPNC++P++V +T+  ++AI+  AAL
Sbjct: 179 RLTRAAVMGELNRDYVTAARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAAAL 238

Query: 248 SFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNP 307
            FLGLG+    P  G++++    YI   AWW+ + PG+ ++L VL INL+GD LRD  +P
Sbjct: 239 GFLGLGVQPPTPEWGTMLASARDYI-ERAWWVVSLPGLTILLSVLAINLMGDGLRDALDP 297

Query: 308 KI 309
           K+
Sbjct: 298 KL 299