Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  213 bits (541), Expect = 6e-60
 Identities = 114/302 (37%), Positives = 180/302 (59%), Gaps = 19/302 (6%)

Query: 8   PSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAEL 67
           PS ++ F Q+     F ++K A++     +L V  A+ AP +AP +P +     ++    
Sbjct: 17  PSPYKEFWQA-----FSKNKGAVAGLLFMILIVFCALFAPWVAPHDPSEQYRDFLLT--- 68

Query: 68  PPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFG 127
           PP W+EGG   F+LGTDE GRD+ S ++ GSRLSL IG  +V + L  GI++GL AG+F 
Sbjct: 69  PPVWLEGGQWQFILGTDELGRDLLSRLIQGSRLSLLIGLASVVMSLIPGILLGLLAGFFP 128

Query: 128 GRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYA 187
             +   +MR  DI L+  ++++A+ + AI              ++  V+ I +   P Y 
Sbjct: 129 RVLGPSVMRLMDIMLALPSLLLAVAIVAILGPG----------LINTVIAIAIVSLPSYV 178

Query: 188 RTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAAL 247
           R  RA+V+ E  ++YV AAR+ G   PR+MF  +LPNC++P++V +T+  ++AI+  AAL
Sbjct: 179 RLTRAAVMGELNRDYVTAARLAGATLPRLMFITVLPNCMAPLIVQATLSFSSAILDAAAL 238

Query: 248 SFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNP 307
            FLGLG+    P  G++++    YI   AWW+ + PG+ ++L VL INL+GD LRD  +P
Sbjct: 239 GFLGLGVQPPTPEWGTMLASARDYI-ERAWWVVSLPGLTILLSVLAINLMGDGLRDALDP 297

Query: 308 KI 309
           K+
Sbjct: 298 KL 299