Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  193 bits (490), Expect = 5e-54
 Identities = 110/293 (37%), Positives = 174/293 (59%), Gaps = 20/293 (6%)

Query: 16  QSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGG 75
           +S FL  FL +K A+   AV +LFV+ A+ AP IAP +P   + + +  A     WM   
Sbjct: 17  RSPFLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAPSLIYWM--- 73

Query: 76  NEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLM 135
                 GTDE GRD+FS +LYG+R SL  G ++V + + +G+ +GL AGYFGG++D  + 
Sbjct: 74  ------GTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIIS 127

Query: 136 RFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVL 195
           +  +  LS   +++AI + A    S          +   ++ IG++  P +AR  R  VL
Sbjct: 128 QVMEALLSCPFLVLAIALGAFLGPS----------LTNAMIAIGLSAMPIFARLTRGQVL 177

Query: 196 AEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLP 255
           + K ++Y+E AR +G     I+ R++LPN +SP++V +T+ +A+AI++EA+LSFLGLG  
Sbjct: 178 SIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQ 237

Query: 256 VDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308
              PS GS+++    ++   A W++  PG+ + + VL  NLLGD LRD  +PK
Sbjct: 238 PPSPSWGSMLNTAKNFM-EQAPWMSIAPGVAIYITVLCFNLLGDGLRDALDPK 289