Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  250 bits (638), Expect = 3e-71
 Identities = 133/306 (43%), Positives = 189/306 (61%), Gaps = 16/306 (5%)

Query: 7   APSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAE 66
           A S W R      L  F     A++   V ++ V+VA  AP I   NPYDL  +++MDA 
Sbjct: 16  AQSPWRRV-----LTEFFSSPTAVTGLVVLLIIVLVAALAPWIVVQNPYDLMQLNVMDAR 70

Query: 67  LPPSWMEGGNEH-FLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGY 125
           +PP  + G + + + LGTD QGRD+ S I+YG R+SL +G  +  +   LG ++GL + Y
Sbjct: 71  MPPGSLNGDSGYTYWLGTDGQGRDLVSAIIYGLRISLWVGIGSALIAAVLGTLLGLVSAY 130

Query: 126 FGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQ 185
            GG +D+ LMR  D+ LSF  +++A+++ A      G         VML +I+   EW  
Sbjct: 131 VGGWLDALLMRLVDLLLSFPVILMALMILAWLGKGVGN--------VMLTLIL--LEWAY 180

Query: 186 YARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEA 245
           YART R   L E ++EYV+AAR  G    RI+  HILPNCL P++VI  +Q+A AI  EA
Sbjct: 181 YARTARGQALTESRREYVDAARGQGVGPLRIVIGHILPNCLPPLIVIGALQIARAITLEA 240

Query: 246 ALSFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVF 305
            LSFLGLG+PV +PSLG LI+ GF Y+ S  +WI+ FPG+ L++ ++ INL+GD LRDV 
Sbjct: 241 TLSFLGLGVPVTEPSLGLLIANGFQYMLSNEYWISLFPGLALLITIVAINLVGDRLRDVL 300

Query: 306 NPKIYK 311
           NP++ +
Sbjct: 301 NPRLQR 306