Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  191 bits (486), Expect = 1e-53
 Identities = 106/282 (37%), Positives = 172/282 (60%), Gaps = 12/282 (4%)

Query: 24  LRDKVAMSSFAVFVLFVIVAISAPLIAP-TNPYDLSSIDIMDAELPPSWMEGGNEHFLLG 82
           LR   A   FA+  + +++ +   L AP   PYD  + D+M    PP WM  G   ++LG
Sbjct: 25  LRSSFAHRGFAIGAVLLLIILLGALFAPWLAPYDPYAQDVMLRMKPPVWMANGTWDYVLG 84

Query: 83  TDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQL 142
           TD+ GRD  S +LYG+R+SL IGF A  +   +G ++GL AGYFGG+ D+ +      +L
Sbjct: 85  TDKLGRDYLSRLLYGARISLFIGFSAALISGIIGTIMGLLAGYFGGKTDALISYLITTRL 144

Query: 143 SFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEY 202
           +   +M+A+  +++     GG      ++ +++V++G   W ++A  VRA+V   +  EY
Sbjct: 145 AMPVVMIALASASL----IGG------SLKVVIVLLGCLLWDRFAVVVRAAVQQIRDAEY 194

Query: 203 VEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLG 262
           V +A+ +G    RI+   ILPN +  ++V++T+++A+AI+ E+ALSFLG+G+    PS G
Sbjct: 195 VASAQALGCSTLRILASEILPNLVGALIVVATLEMAHAILLESALSFLGVGVQPPIPSWG 254

Query: 263 SLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDV 304
            +I+ G  Y+F    W+ A PG+ L++LVL INL+GD LRD+
Sbjct: 255 LMIAEGKPYMFFSP-WVIAIPGVALMVLVLGINLVGDGLRDL 295