Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  181 bits (460), Expect = 2e-50
 Identities = 106/286 (37%), Positives = 164/286 (57%), Gaps = 20/286 (6%)

Query: 23  FLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLG 82
           F+R+ +A+   A+F+  VI+A  AP IAP +P   +   + +  LPPS          LG
Sbjct: 43  FIRNPLAVIGLAIFLCLVILATFAPWIAPHDPLFGT---LSERLLPPS------AGHWLG 93

Query: 83  TDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQL 142
           TD+QGRDI+S I++GSR +L I FL       +G++IG +AG+ GG +++ LMR  D  L
Sbjct: 94  TDQQGRDIWSRIVFGSRTTLMIIFLVAITAAPVGLLIGTTAGFVGGIVEAALMRLTDAFL 153

Query: 143 SFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEY 202
           +F  +++A+  +A   A               V+ I +  WP YAR  RA  LA ++ ++
Sbjct: 154 AFPKLILALAFAAALGAGLENA----------VLAIALTAWPPYARIARAETLAVRRTDF 203

Query: 203 VEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLG 262
           V AAR+ G    RI+   I+P C+  ++V  ++ +A  I+  A L FLGLG+   QP  G
Sbjct: 204 VAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAGVILIAAGLGFLGLGVAPPQPEWG 263

Query: 263 SLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308
           +++S G + I +  WW+  +PGI + ++ L  NLLGD LRDV +PK
Sbjct: 264 AMVSEGRSQILA-QWWVCTYPGIAICIVSLGFNLLGDGLRDVLDPK 308