Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., permease protein, ABC-type oligopeptide transporter from Marinobacter adhaerens HP15

 Score =  186 bits (473), Expect = 5e-52
 Identities = 103/272 (37%), Positives = 166/272 (61%), Gaps = 14/272 (5%)

Query: 33  FAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGTDEQGRDIFS 92
           F + ++  + A+ AP +AP +PY L ++ +    LPP W+EGG+  +LLGTD  GRD  S
Sbjct: 42  FGILLVMAVFAVFAPWLAPHDPY-LQNLPMR--MLPPVWVEGGSWEYLLGTDHLGRDYMS 98

Query: 93  TILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLSFSTMMVAII 152
            I+YG+R+S+TIG  A  + + +G+ +GL AGYFGG +D  +      QL+  +++  +I
Sbjct: 99  RIIYGARISMTIGIGAATIGMVIGVTLGLIAGYFGGWLDQAVNFLVTCQLAVPSLL--LI 156

Query: 153 VSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYVEAARVMGFK 212
           ++ +F            ++ +++ +IG   W  Y    R++ L  ++ ++V AA+ MG  
Sbjct: 157 MALVFVIG--------QSITVVIFVIGATHWVFYLVVTRSATLRLRELDFVAAAQAMGCS 208

Query: 213 APRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSLISIGFTYI 272
             +I  + +LPN ++ I+VI T++VA AI++EA LSFLGLG+P   PS G +I+ G   +
Sbjct: 209 KFQIAVKEVLPNLVNQIMVIFTLEVAVAILNEATLSFLGLGIPSPIPSWGLMIAEGKQAM 268

Query: 273 FSGAWWITAFPGIVLVLLVLVINLLGDWLRDV 304
           F    W+   PGI L +LV+ INLLGD +RDV
Sbjct: 269 FFQP-WLVILPGISLFILVIAINLLGDGVRDV 299