Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  389 bits (998), Expect = e-113
 Identities = 198/299 (66%), Positives = 233/299 (77%)

Query: 13  RFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWM 72
           RF++S FLY FLRD VA+ SFA+  +  + AI APLIAP +PYD +++DIM+AELPP+W 
Sbjct: 7   RFRKSYFLYSFLRDPVAVGSFALLFILAVSAILAPLIAPHSPYDGATLDIMNAELPPAWK 66

Query: 73  EGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDS 132
             G   FLLGTD QGRDI S +LYG R+SL IG  AV LQ  +GI +GL +GY   RIDS
Sbjct: 67  PEGTADFLLGTDNQGRDILSAMLYGMRVSLVIGLGAVALQSVIGIFVGLVSGYGSKRIDS 126

Query: 133 FLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRA 192
            LMR AD+QLSFS+ MVAI   AI +   G   + + AV  L+ +IG++EWPQ ARTVRA
Sbjct: 127 ILMRVADVQLSFSSYMVAIFFGAILQMVVGVGRYEEVAVPFLIFVIGLSEWPQIARTVRA 186

Query: 193 SVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGL 252
           SVLAEKKKEYVEAARV+G  A RIM RHILPN L+P+LVISTVQVANA+MSEAALSFLGL
Sbjct: 187 SVLAEKKKEYVEAARVIGLPARRIMLRHILPNTLTPVLVISTVQVANAVMSEAALSFLGL 246

Query: 253 GLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYK 311
           G+PV QPSLGSLI  GF Y FSG+WWIT FPGI+L+LLVL INLLGDWLRD  NPK+YK
Sbjct: 247 GMPVTQPSLGSLIKSGFQYFFSGSWWITLFPGIMLILLVLSINLLGDWLRDFLNPKLYK 305