Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  199 bits (505), Expect = 9e-56
 Identities = 112/290 (38%), Positives = 173/290 (59%), Gaps = 20/290 (6%)

Query: 22  YFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLL 81
           ++ R+ +    FA+     ++A+ AP IAP +P  L    I+          G +   LL
Sbjct: 31  FWQRNILFAIGFAIVGSMSLLALLAPWIAPYDPTALHLDTILS---------GPSATHLL 81

Query: 82  GTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQ 141
           GTD  GRD+ S +LYG+R+SL +GF++VG+ + +G+ +GL AGYFGG ID   MR  DI 
Sbjct: 82  GTDALGRDVLSRLLYGARVSLWVGFVSVGIAVAIGLAVGLVAGYFGGIIDELAMRLVDIM 141

Query: 142 LSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKE 201
           L F +  + + V A  + S G           ++ +IG+  W   AR VRA  L+ +++E
Sbjct: 142 LCFPSFFLILAVIAFLEPSLGN----------IMAVIGLTSWMGVARLVRAETLSLRERE 191

Query: 202 YVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSL 261
           +V AAR+ G    RI+  HILPN ++P+LV +T+ VA AI++E+ALSFLGLG+    PS 
Sbjct: 192 FVAAARLAGAGRTRIILTHILPNAMAPVLVSATLGVAGAILTESALSFLGLGVQPPDPSW 251

Query: 262 GSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYK 311
           G+++  G   +   A W++ FPG+ +++ VL  NLLG+ LRD  +P++ K
Sbjct: 252 GNMLLEG-KDVLEIAPWMSLFPGLAILVTVLGYNLLGESLRDFLDPRLKK 300