Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  214 bits (546), Expect = 2e-60
 Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 16/333 (4%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQA-LRDELGLND 58
           MFSF+ +RL   +   F I+L+ FA+   + GDP+  ++G+   + E  A   + LGLN 
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++    QGDLG S   +            ATLEL   A L   +  +  GV 
Sbjct: 61  PLYAQYLDYIGKLAQGDLGESLRTRESVWTEFSSLFPATLELSMAALLFAGILGLLAGVI 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETV-------- 170
           +A+   SLF   VM  S  G S+P+F   ++L+  FS+ LGW P  GR + +        
Sbjct: 121 AALKRGSLFDHGVMGVSLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 171 -----NLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQA 225
                 LL  E G F LD L HL+LP+I L +I L +  R+ RS MLEVL  +YI+ A+A
Sbjct: 181 FMLIDTLLADEPGAF-LDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKA 239

Query: 226 KGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVD 285
           KGL  +++ + H L+N ++PVLTV G+Q+GT++A  +LTET+F WPG G   +EAI   D
Sbjct: 240 KGLSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 286 TPLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
            P++   ++ +  + ++ N +VD+LYG  NP +
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGFANPRI 332