Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  181 bits (459), Expect = 2e-50
 Identities = 100/320 (31%), Positives = 181/320 (56%), Gaps = 16/320 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF 60
           M  FL++RL  A+ V   +S+++F++    GD    + G   +  + + +R + GL+ P 
Sbjct: 1   MLGFLLRRLGIAICVAITVSVISFSLLHLSGDLATAIGGPEATSEQIEQIRVQYGLDKPL 60

Query: 61  IIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSA 120
             +Y  ++   ++ DLG S+FF+     ++  +L  TL L   A  I ++ +IPLGV +A
Sbjct: 61  PTQYFNWLGDLLRLDLGDSFFFQESVYNLVASRLPITLGLGAMALGIALLVAIPLGVLAA 120

Query: 121 IHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGFF 180
           +   +   ++ ++ + +G ++P F  A+ML+ VF++ L WLP  G               
Sbjct: 121 VKRDTWVDRLALSIAVLGQAMPSFWFALMLIVVFAVTLKWLPVSGNST------------ 168

Query: 181 TLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALK 240
               L H V+P+IAL     P  +RL R+ ML+VLSS+YI+ A+AKGL   ++ ++HAL+
Sbjct: 169 ----LLHFVMPAIALGYYATPAIMRLTRAGMLDVLSSDYIRTARAKGLRPARVLFKHALR 224

Query: 241 NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF 300
           N ++PV+ +  V+ G M+  +++ ETVF   G G L  +AI R D P++ A V+ + +I+
Sbjct: 225 NALIPVVALAAVEFGFMLGGSVVIETVFSLQGIGQLAWDAIARDDFPVVQAVVLLIAVIY 284

Query: 301 VVTNTIVDLLYGLINPTVNL 320
           ++   + D+L  L++P + +
Sbjct: 285 IILTLLADVLNALLDPRIRV 304