Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  210 bits (534), Expect = 5e-59
 Identities = 121/333 (36%), Positives = 185/333 (55%), Gaps = 16/333 (4%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQA-LRDELGLND 58
           MFSF+ +R+   +   F I+L+ FA+   + GDP+  ++G+   + E  A   + LGLN 
Sbjct: 1   MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++    QGDLG S   +            ATLEL   A +   +  +  GV 
Sbjct: 61  PLYAQYIDYIGKLAQGDLGESLRTRTSVWSEFTSLFPATLELSLAALIFAGILGLLAGVI 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETV-------- 170
           +A+   SLF   VM  S  G S+P+F   ++L+  FS+ LGW P  GR + +        
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIPPVTG 180

Query: 171 -----NLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQA 225
                 LL  E G F LD L H++LP+I L +I L +  R+ RS MLEVL  +Y++ A+A
Sbjct: 181 FMLIDTLLSDEQGSF-LDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARA 239

Query: 226 KGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVD 285
           KGL   ++ + H L+N ++PVLTV G+QIGT++A  +LTET+F WPG G   +EAI   D
Sbjct: 240 KGLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 286 TPLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
            P++   ++ +  + ++ N +VD+LYG  NP +
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGFANPRI 332