Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  208 bits (529), Expect = 2e-58
 Identities = 114/332 (34%), Positives = 191/332 (57%), Gaps = 14/332 (4%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQ-SVSEAERQALRDELGLND 58
           M SF+++R+   +     ++L+AFA+   + GDP+  + G+  VS A    L  +LGL+ 
Sbjct: 1   MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERGVSPARHAMLMTQLGLDR 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++  A+QGDLG S   ++P +E       AT+EL   A +  ++  IP G+ 
Sbjct: 61  PLWEQYLTYLGKALQGDLGNSIVTRQPVIEEFKTLFPATIELGVFAMVFAVLIGIPAGML 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESG 178
           +A+   +     VM  S  G S+P+F   ++L+ + S  LGW P  GR +++  +   +G
Sbjct: 121 AAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGILGWTPVSGRIDSIMWIDTVTG 180

Query: 179 FFTLDGL------------RHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAK 226
           F  +D L             HL+LP+I + +I L +  R+ RS MLEVL  +Y++ A+AK
Sbjct: 181 FMLIDSLLSDEPGAFLSAVHHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVRTARAK 240

Query: 227 GLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDT 286
           G+   ++   HAL+N ++PV+TV G+Q G ++A  ILTET+F WPG G   +++INR D 
Sbjct: 241 GVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSINRRDY 300

Query: 287 PLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
           P +   ++ +  + ++ N +VD+LYG+INP +
Sbjct: 301 PAVQGGILLISTVVILVNLLVDVLYGVINPRI 332