Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  192 bits (488), Expect = 9e-54
 Identities = 114/330 (34%), Positives = 183/330 (55%), Gaps = 22/330 (6%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNLG--DPLRELVGQSVSEAERQAL---RDELG 55
           M SF++KRL   + ++   SLV F +   LG  DP  + +  S      QAL   R  LG
Sbjct: 1   MVSFVLKRLALLVPMLLGASLVIFLML-RLGPSDPAMDYLRLSRIPPTVQALAETRQRLG 59

Query: 56  LNDPFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPL 115
           L+ P  ++Y  ++  A+  D G SY   RP L  +   L ATL L   A  + +  SIPL
Sbjct: 60  LDQPLAVQYWVWLNKALHLDFGVSYATGRPVLPDLLHYLPATLHLAGVALALTLGLSIPL 119

Query: 116 GVYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGW 175
           G+++A    +L  +IV   + +G+S+P F    +L+ VFS+ELGWLP+ GRG        
Sbjct: 120 GMWAARRRDALPDQIVRGVAFLGVSMPNFWLGFLLVLVFSVELGWLPAMGRG-------- 171

Query: 176 ESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYY 235
                   G  H+++P++A+A + L +  RL+R+ MLEV    ++ +A+ +GL   K+  
Sbjct: 172 --------GAEHMIMPAVAIAFMSLSINARLLRASMLEVSGQRHVYYARLRGLSAAKVER 223

Query: 236 QHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIF 295
            H L+N +LP++T  G+ +G ++  T++ E++F WPG G   + AI   D P+I  + + 
Sbjct: 224 AHILRNALLPIITATGMHVGELIGGTLVIESIFGWPGVGRFAVSAIFNRDYPVIQCFTLL 283

Query: 296 VGLIFVVTNTIVDLLYGLINPTVNLTGKGA 325
           + LIFV+ N IVD++Y   +P + L  +GA
Sbjct: 284 MVLIFVLCNLIVDIVYAWADPRIRLAAEGA 313