Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  172 bits (437), Expect = 7e-48
 Identities = 97/316 (30%), Positives = 177/316 (56%), Gaps = 9/316 (2%)

Query: 4   FLVKRLYQALIVMFVISLVAFA-IQDNLGDPLRELVGQSVSEAERQALRDELGLNDPFII 62
           FL++R+   L V+ V++L+ F  ++   GDP   +VG + +  +   +R +LGL+DP  +
Sbjct: 4   FLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVGATGTAEDIARVRADLGLDDPMPV 63

Query: 63  KYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSAIH 122
           ++ R+    +QGDLG S+F K+  + +I  ++  TL L     ++ I+ ++PLGV +A  
Sbjct: 64  QFVRWAGQMLQGDLGESFFMKQTVVALIAQRIEPTLSLSAMTLVMTILIAVPLGVIAAWR 123

Query: 123 PKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGFFTL 182
                 + +M  S +G SIP F+    L+++F++    LP  G            G    
Sbjct: 124 HGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQMLPVQGYVRF--------GDDPS 175

Query: 183 DGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALKNT 242
             LRHL++P++ L+ I + L  R+ R+ + E ++ +YI+ A+AKG+   ++  +HAL N 
Sbjct: 176 RWLRHLIMPAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMRHALANA 235

Query: 243 MLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVV 302
            +P++TV G+ +  ++   ++TE VF  PG G L ++A+   D PLI    +F  +++++
Sbjct: 236 AVPIVTVIGIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFFSVLYML 295

Query: 303 TNTIVDLLYGLINPTV 318
            N  VDL Y L +P +
Sbjct: 296 INLAVDLSYLLFDPRI 311