Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  176 bits (445), Expect = 9e-49
 Identities = 106/313 (33%), Positives = 169/313 (53%), Gaps = 9/313 (2%)

Query: 7   KRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDPFIIKYS 65
           +RL  A+ V+ + + + F +   + GD    L G + SE     +R+  GLN PF+++Y 
Sbjct: 12  RRLLHAVPVVVLSTFIVFGLLKLVPGDVAVTLAGDNASEQRIAEIRELYGLNQPFLVQYG 71

Query: 66  RFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSAIHPKS 125
            ++  AVQGDL TS       L  I   L  TL +V  A    +V  +PLG+ +A  P S
Sbjct: 72  AWLWKAVQGDLSTSLVSSEAVLTSIERCLPHTLLIVALALFTALVIGVPLGIAAAAKPGS 131

Query: 126 LFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGFFTLDGL 185
               IVMA +S+G+++P F   ++L+  FS++L WLP+ G    +              L
Sbjct: 132 WIDGIVMAIASLGVAVPNFWLGMLLVAFFSLQLNWLPATGAASLMK--------DPAAAL 183

Query: 186 RHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALKNTMLP 245
            H +LP++ALAS  +    R +RS ++E+LSS+ ++   AKGLP + I ++H LKN  + 
Sbjct: 184 SHAILPALALASGGIAEVARQLRSSLVEILSSQQVRTLHAKGLPPSSILWRHGLKNVSVN 243

Query: 246 VLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNT 305
           +LTV  +    M+A T++ E VF  PG G L + A    D P++   V  + LI V  N 
Sbjct: 244 LLTVISLLANRMLAATVVVEAVFAIPGMGGLIVNAAMHRDFPVVQGVVFTMVLIVVALNL 303

Query: 306 IVDLLYGLINPTV 318
           + D+LY +++P +
Sbjct: 304 LTDILYSVLDPRI 316