Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., ABC-type dipeptide/oligopeptide/nickel transport system, permease component from Dechlorosoma suillum PS

 Score =  177 bits (449), Expect = 3e-49
 Identities = 110/317 (34%), Positives = 172/317 (54%), Gaps = 6/317 (1%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDP 59
           MF++++KRL  A+ +   +++V+F +     GDPL  +      E   QAL+   GL+ P
Sbjct: 1   MFAYILKRLIYAIPIALSVTVVSFVLVYLAPGDPLNAIAPADAPEEVIQALKSAYGLDKP 60

Query: 60  FIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYS 119
             ++Y  ++  AVQGDLG S    R     +   +  TL L   A  I +V    LG  +
Sbjct: 61  VPVQYGLWLMRAVQGDLGLSIASGREVTAEVLSAVSNTLLLAGMAAAIGVVLGCILGALA 120

Query: 120 AIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGF 179
                +   K   A S +G+SIP +   ++L  +FSI L W P+ G G      G     
Sbjct: 121 GYRHGTWIDKAATALSVVGVSIPHYWLGLVLTILFSIWLPWFPAMGAGPG----GSGEWL 176

Query: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239
           + L+ LR+LVLP++ L+ I + +  R VR+ + ++L  E++   +A+GL    ++ +H  
Sbjct: 177 WDLEHLRYLVLPALTLSVIPMGIITRTVRALVADMLGQEFVTALRARGLSGGAVF-RHVA 235

Query: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299
           KNT   VL V G+QIG ++  +IL ETVF WPGTGFL   AI + D PL+   ++ + + 
Sbjct: 236 KNTAPTVLAVAGLQIGYLMGGSILVETVFAWPGTGFLLNTAIFQRDIPLLQGTILVLCMF 295

Query: 300 FVVTNTIVDLLYGLINP 316
           FVV N +VD+L  LI+P
Sbjct: 296 FVVLNLLVDILQPLIDP 312