Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., nickel transporter permease NikB (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  188 bits (478), Expect = 1e-52
 Identities = 106/324 (32%), Positives = 182/324 (56%), Gaps = 20/324 (6%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAI-QDNLGDPLRELVGQSVSEAERQAL---RDELGL 56
           M ++++KRL   + ++ ++S+V F + +   GDP    +  S      +AL   R  L L
Sbjct: 1   MPAYILKRLAALIPLLLLVSVVVFLLLRAAQGDPAMAYLRLSRIPPTDEALATARRMLEL 60

Query: 57  NDPFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLG 116
           + P   +Y+R++  AV GD G SY   RP L  +   L ATL+L   A L+ ++ SIPLG
Sbjct: 61  DLPLWEQYARWLARAVTGDFGNSYVTGRPVLGEVLHYLPATLQLAGAALLLTLIVSIPLG 120

Query: 117 VYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWE 176
           V +A+H          A S   +S+P F    +L+++F+++LGWLP+ GRG         
Sbjct: 121 VGAALHRDRPLDNAARALSFTSVSLPNFWLGFLLVWLFAVKLGWLPALGRG--------- 171

Query: 177 SGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQ 236
                  GL HLVLP++ L+ + + +  RL+R+ +LE + + +I +A+A+G+    + ++
Sbjct: 172 -------GLEHLVLPAVTLSLMSMGINTRLIRASLLENMHARHIMYARARGISERGVVWR 224

Query: 237 HALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFV 296
           H  KN+++PVLT  G+ +G ++   ++ ETVF WPG G   + A+   D P++  +++ +
Sbjct: 225 HMFKNSLIPVLTSLGMHVGELLGGAVIVETVFAWPGVGRYAVSAVYNRDYPILQCFMLLM 284

Query: 297 GLIFVVTNTIVDLLYGLINPTVNL 320
             IFV+ N  VD+LY   +P + L
Sbjct: 285 TAIFVLCNLAVDILYAWADPRIRL 308