Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  410 bits (1053), Expect = e-119
 Identities = 192/324 (59%), Positives = 260/324 (80%), Gaps = 1/324 (0%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF 60
           MF+F+V+R+ QAL+VMF+IS + FAI+ ++GDP RE+VG SVS  ER+ALR++LGLNDP+
Sbjct: 1   MFAFIVRRVAQALLVMFIISFIGFAIKQSVGDPTREMVGVSVSVKEREALREKLGLNDPY 60

Query: 61  IIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSA 120
           +++++RF   AVQGDLGTSYF+++PAL+VI  K  ATLELVF A  II++ S+P+GVYSA
Sbjct: 61  LVQWARFTKNAVQGDLGTSYFYRKPALDVILAKAPATLELVFVAQCIIVLISVPVGVYSA 120

Query: 121 IHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLL-GWESGF 179
             P+S+ +++ M  S +G+S+PVFLTAI ++Y+FS+ LGWLPS+GRG  V +  GW S  
Sbjct: 121 CRPRSVLSRLFMGISIVGVSVPVFLTAIFMIYIFSVHLGWLPSFGRGNPVEIFPGWTSVL 180

Query: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239
            T    +H++LPSIAL+SIMLPLFIRL+R+EM E L +EY+KFA+AKGLP  ++   HA 
Sbjct: 181 TTWSNFKHIILPSIALSSIMLPLFIRLIRAEMKEALETEYVKFARAKGLPEWRVVMVHAF 240

Query: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299
           KNT+LPV+TVGGVQ+G M+A+TILTETVFQW G GF+F+EA+ R DT L+ AY+IFVG I
Sbjct: 241 KNTLLPVITVGGVQLGIMIAFTILTETVFQWQGMGFMFVEAVERADTALLVAYLIFVGAI 300

Query: 300 FVVTNTIVDLLYGLINPTVNLTGK 323
           FV  NT+VDL+YG +NP V + G+
Sbjct: 301 FVTVNTVVDLIYGFVNPMVRIAGR 324