Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Pantoea sp. MT58

 Score =  207 bits (528), Expect = 2e-58
 Identities = 124/336 (36%), Positives = 188/336 (55%), Gaps = 19/336 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQA-LRDELGLND 58
           M  F+++RL   +     I+L+ FA    + GDP+  + G+     ER A L   LGL+ 
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVLIMAGERGISPERHAQLMALLGLDQ 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++   + GDLG S   + P  +    +  ATLEL   A +  +   IP+GV 
Sbjct: 61  PLWKQYLHYINGVLHGDLGISLKSRIPVWDEFVPRFKATLELGICAMIFAVAIGIPVGVL 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGR-GETVNL----- 172
           +A+   S+F    +  S  G S+P+F   IML+ + S++    P  GR G+TV L     
Sbjct: 121 AAVKRGSIFDHTAVGISLTGYSMPIFWWGIMLIMLVSVQFNLTPVSGRVGDTVFLDDSMP 180

Query: 173 ---------LGW-ESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKF 222
                      W E G F  D + H++LP+I L +I L + +R+ RS MLEVL  +YI+ 
Sbjct: 181 LTGFMLIDTFFWGEPGDFH-DAVMHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRT 239

Query: 223 AQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAIN 282
           A+AKGL   ++   HAL+N MLPV+TV G+Q+GT++A  ILTET+F WPG G   +EA+ 
Sbjct: 240 ARAKGLTRMRVIVVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIEALQ 299

Query: 283 RVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
           R D P++   V+   ++ +V N +VDLLYG++NP +
Sbjct: 300 RRDYPVVQGGVLLTAVLIIVVNLLVDLLYGVVNPRI 335