Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  163 bits (413), Expect = 1e-44
 Identities = 156/524 (29%), Positives = 231/524 (44%), Gaps = 45/524 (8%)

Query: 6   NKLALALIAAGLSF--GAMAADITVAYDADPVSMDPHEQLSGGTLQ-LSHMVFDPLIRFT 62
           N L  A+ AA LS   GA A  + V  +A P   D  +  +  T   +S  +F+ L+ F 
Sbjct: 4   NPLRAAIAAALLSVAVGATAKPLVVCTEASPEGFDMVQYTTAVTGDAVSETIFNRLVGFK 63

Query: 63  Q-KMEFEPRLAESWQRVDNE-TMRFTLRKGVKFHSGN------DFTADDVVWTFNRLKE- 113
               E  P LAESW   D+  T  F LRKGVKFH+        D  ADDVVW+F R  + 
Sbjct: 64  PGTTEVIPALAESWDISDDGLTYTFHLRKGVKFHTTEYFKPTRDMNADDVVWSFQRQLDP 123

Query: 114 --------SADFK-----GIFEPLVSLTKVDDYTIEIK-TAGTYPLIENVATYIFPMDSK 159
                   S  F      G  E L S+ KVD++T++   T    P + ++A       S 
Sbjct: 124 NHPWHKLSSVGFPYFESMGFKELLKSVEKVDEHTVKFSLTRREAPFLADIAMAF----SS 179

Query: 160 FYTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGN 219
            Y    AD   KA      NS       GTGPF      +  ++ F+ NP+Y+    K  
Sbjct: 180 IYPAEYADQLLKAGKTGDLNS----KPIGTGPFVFQRYNKDAQVRFKANPDYF--LGKPP 233

Query: 220 VDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMN 279
            D L LA+  ++  R+  L +    +     P+D   IK    + +  +    V    MN
Sbjct: 234 ADALVLAIATDNNVRMQKLKTNECQIALYPKPDDIPGIKKDPNLKVAELDAMTVSYTAMN 293

Query: 280 QNSNPALKDVRVRQAIVYAINNEGIVDKVM-KGAATTAAQQSPVGYAGYNENLK-PRFDL 337
             S+  + DVRVR+AI  A + E  V+ +  KG AT A    P    G+N +LK P  +L
Sbjct: 294 -TSHKYMSDVRVRKAIDLAFDKEAYVNALFGKGNATVAVNPYPPTLLGFNHDLKNPPRNL 352

Query: 338 NKAKELMKEAGYEKGFNLTMIAPNN---RYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQ 394
           +KA+EL+KEAG  +G   T+   N       N    AQ   A L+K+GIKVD++ M   +
Sbjct: 353 DKARELLKEAGVPEGTVFTLFTRNGGGPTNPNPMLGAQMMQADLAKVGIKVDIRVMEWGE 412

Query: 395 YWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNA 454
                     DM+  GW  D  D  N   FLT        K   N   + N +   L++ 
Sbjct: 413 MLKRAKNGEHDMVSAGWAGDNGDPDN---FLTPMLSCEAAKNGENYARWCNEKFQALIDQ 469

Query: 455 ANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLD 498
           A    + E+R+ + ++ + I   +  ++ +       A +N ++
Sbjct: 470 ARATVNPEERAKLYEQAQVIFNQDQPWISMAHTRMFTAMRNNVE 513