Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  148 bits (373), Expect = 6e-40
 Identities = 134/509 (26%), Positives = 226/509 (44%), Gaps = 48/509 (9%)

Query: 11  ALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLS-HMVFDPLIRFTQK-MEFE 68
           A + A   F   A ++    +  P   DP +  +G     S   +F+ L +F +      
Sbjct: 13  ASLLASAPFAQAATNLVFCSEGSPAGFDPGQYTTGTDFDASAETMFNRLTQFERGGTAVI 72

Query: 69  PRLAESWQRVDNE-TMRFTLRKGVKFHSG------NDFTADDVVWTFNRLKESAD-FK-- 118
           P LA  W   D+  T  F LR+GVKFH+        +F ADDV++TFNR+    D F+  
Sbjct: 73  PGLATKWDISDDGLTYTFHLREGVKFHTTPYFKPTREFNADDVLFTFNRMISKDDPFRKA 132

Query: 119 -----------GIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTAD 167
                      G+   +  + KVDD+T++      + L +  A +I  M   F +  +A+
Sbjct: 133 YPTEFPYFTDMGMDTNITQIDKVDDHTVK------FTLKDVDAAFIQNMAMSFASIQSAE 186

Query: 168 GKNKAEIVKHGNS-FASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLA 226
               A+++K G +   ++   GTGPF   + ++   + +  N +YW K     +D L  A
Sbjct: 187 --YAAQLLKEGKAPDINQKPVGTGPFVFKSYQKDSNIRYTGNKDYW-KPDDVKIDNLIFA 243

Query: 227 VIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMN------- 279
           +  + + R+  L      +     P D + +K+ K + +    G  +     N       
Sbjct: 244 ITTDPSVRMQKLKKNECQITLFPRPADLKALKEDKTLKMPDQAGFNLGYIAYNVMDKIKG 303

Query: 280 QNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLK-PRFDLN 338
            N    L +++VRQA+  A+N   I+D V +GA   A    P     Y+  +K  ++D  
Sbjct: 304 SNEPNVLANLKVRQALDMAVNKPQIIDSVYQGAGQLAVNAMPPTQWSYDTTIKDAKYDPE 363

Query: 339 KAKELMKEAGYEKGFNLTMIA-PNNRYVND--EKIAQAASAMLSKIGIKVDLKTMPKAQY 395
           KAKEL+KEAG ++G N+T+ A P  R  N   + +A+   +   KIG+ V++ +    +Y
Sbjct: 364 KAKELLKEAGVKEGTNITLWAMPVQRPYNPNAKLMAEMLQSDWKKIGLNVNIVSYEWGEY 423

Query: 396 WPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAA 455
                      ++IGW  D  D  N+   L    DS  G    N   + + + D LV  A
Sbjct: 424 IKRSKGGENQAMIIGWSGDNGDPDNWLNVL-FGCDSLAGN---NFSKWCDKKFDGLVKEA 479

Query: 456 NEETDLEKRSTMLKKVEEILYNEAAFVPL 484
              TD  KR+ + K+ + +L +     P+
Sbjct: 480 KRTTDQAKRTELYKQAQHVLKDAVPMTPI 508