Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  140 bits (353), Expect = 1e-37
 Identities = 132/506 (26%), Positives = 213/506 (42%), Gaps = 45/506 (8%)

Query: 8   LALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLS-HMVFDPLIRFTQK-M 65
           L LALI++       A  +    +A P   DP +  SG     S   VF+ L +F +   
Sbjct: 11  LTLALISSA-PMAQAATTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGGT 69

Query: 66  EFEPRLAESWQ-RVDNETMRFTLRKGVKFHS------GNDFTADDVVWTFNRL------- 111
           E EP LA  W    D     F LR+GVKFH+        DF ADDV++TF RL       
Sbjct: 70  EVEPGLATRWDVSADGLVYTFHLREGVKFHTTDYFSPSRDFNADDVLFTFQRLLDPQHPF 129

Query: 112 -----KESADFK--GIFEPLVSLTKVDDYTIEIKTAGT-YPLIENVATYIFPMDSKFYTG 163
                 ES  F   G+   + S+ KVD++T+           ++N+A     + S  Y  
Sbjct: 130 RQAYPTESPYFTDMGLNTTIKSVEKVDEHTVRFNLNNVDAAFVQNLAMSFASVQSAEYA- 188

Query: 164 TTADGKNKAEIVKHGNSF-ASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDK 222
                   A+++K G +   ++   GTGPF     ++  ++ +  N  YW K     +D 
Sbjct: 189 --------AQLLKEGKAGDLNQKPIGTGPFVFKRYQKDSQIRYAGNTAYW-KPEDVKLDN 239

Query: 223 LTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS 282
           L  ++  + A R+  L  G   +     P D + ++    + +   PG   + F     +
Sbjct: 240 LIFSITPDAAVRLQKLKRGECQVSGYPRPADIEVMEQDPNLQVLKQPGFN-LGFLAYNVT 298

Query: 283 NPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR-FDLNKAK 341
           +P L  ++VRQA+  AI+   I+  V + A   A    P     ++ N+K    D+ KAK
Sbjct: 299 HPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSFDPNIKDAPHDVTKAK 358

Query: 342 ELMKEAGYEKGFNL---TMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPE 398
            L+KEAG   G  +    M        N    AQ      +KIGIK ++ +    +Y   
Sbjct: 359 ALLKEAGVAPGTTIDLWAMTVQRASNPNARMSAQMIQQDWAKIGIKANIVSYEWGEYIKR 418

Query: 399 FDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEE 458
                 D ++ GW  D  D  N   +L +       KG  N   + +   D+L+  A   
Sbjct: 419 AKNGEHDAMIYGWTGDNGDPDN---WLGVLYSCAAVKGS-NYAKWCDPAYDQLIQQAKVS 474

Query: 459 TDLEKRSTMLKKVEEILYNEAAFVPL 484
           TD ++R  + ++ ++IL  +    P+
Sbjct: 475 TDRQQRIDLYRQAQKILKQQVPITPI 500