Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  141 bits (355), Expect = 7e-38
 Identities = 133/506 (26%), Positives = 216/506 (42%), Gaps = 45/506 (8%)

Query: 8   LALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLS-HMVFDPLIRFTQK-M 65
           L LALI++       A  +    +A P   DP +  SG     S   VF+ L +F +   
Sbjct: 11  LTLALISSA-PMAQAATTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGGT 69

Query: 66  EFEPRLAESWQ-RVDNETMRFTLRKGVKFHSGN------DFTADDVVWTFNRL------- 111
           E EP LA +W    D     F LR GVKFH+ +      DF ADDV++TF RL       
Sbjct: 70  EVEPGLATNWDVSADGLAYTFHLRNGVKFHTTDYFTPTRDFNADDVLFTFQRLLDPQHPF 129

Query: 112 -----KESADFK--GIFEPLVSLTKVDDYTIEIKTAGT-YPLIENVATYIFPMDSKFYTG 163
                 ES  F   G+   + S+ KVD++T+           ++N+A     + S  Y  
Sbjct: 130 RQAYPTESPYFTDMGLNTTIKSVEKVDEHTVRFNLNNVDAAFVQNLAMSFASVQSAEYA- 188

Query: 164 TTADGKNKAEIVKHGNSF-ASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDK 222
                   A+++K G +   ++   GTGPF     ++  ++ +  N  YW K     +D 
Sbjct: 189 --------AQLLKEGKAGDLNQKPVGTGPFVFKRYQKDSQIRYAANTAYW-KPEDVKLDN 239

Query: 223 LTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS 282
           L  ++  + A R+  L  G   +     P D + I+    + +   PG   + F     +
Sbjct: 240 LIFSITPDAAVRLQKLKRGECQVSGYPRPADIEVIEQDPNLQVLKQPGFN-LGFLAYNVT 298

Query: 283 NPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR-FDLNKAK 341
           +P L  ++VRQA+  AI+   I+  V + A   A    P     ++ +++    D+ KAK
Sbjct: 299 HPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSFDPSIQDAPHDVTKAK 358

Query: 342 ELMKEAGYEKGFNLTMIAPNNRYV---NDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPE 398
            L+KEAG   G  L + A   +     N    AQ      +KIGIK ++ +    +Y   
Sbjct: 359 ALLKEAGVAPGTTLNLWAMTVQRASNPNARMSAQMIQQDWAKIGIKANIVSYEWGEYIKR 418

Query: 399 FDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEE 458
                 D ++ GW  D  D  N   +L +       KG  N   + +   D+L+  A   
Sbjct: 419 AKNGEHDAMIYGWTGDNGDPDN---WLGVLYSCAAVKGS-NYAKWCDPAYDRLIQQAKVS 474

Query: 459 TDLEKRSTMLKKVEEILYNEAAFVPL 484
           TD +KR  + ++ ++IL  +    P+
Sbjct: 475 TDRQKRIDLYQQAQKILKQQVPITPI 500