Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., extracellular solute-binding protein, family 5 from Pseudomonas syringae pv. syringae B728a

 Score =  146 bits (368), Expect = 2e-39
 Identities = 134/511 (26%), Positives = 223/511 (43%), Gaps = 44/511 (8%)

Query: 2   KTMKNKLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRF 61
           KT+     L L+A    F   A+++    +A P   D  +  S      S  +++ L  F
Sbjct: 3   KTLAMTSCLGLLALA-PFAQAASNLVFCSEASPAGFDGAQYTSSTDNDASEPIYNRLTEF 61

Query: 62  TQ-KMEFEPRLAESWQRV-DNETMRFTLRKGVKFHSGN------DFTADDVVWTFNR-LK 112
            Q      P LA SW    D     F LR+GVKFHS        DF ADDV++TFNR LK
Sbjct: 62  KQGDTTVVPALATSWDTSEDGLVYTFHLREGVKFHSNKNFKPSRDFNADDVLFTFNRMLK 121

Query: 113 ESADFK-------------GIFEPLVSLTKVDDYTIEIKTAGTYP--LIENVATYIFPMD 157
               F+             G+ + + S+ K D  T+ + T  T     I+N+A     + 
Sbjct: 122 PDHPFRVAYPTEFPYFTGMGLNKKIKSVEKTDPLTV-VFTLNTVDAAFIQNIAMNFAGIL 180

Query: 158 SKFYTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASK 217
           S  Y        +  +I        ++   GTGPF     ++  ++ ++ N  +WD  S+
Sbjct: 181 SAEYAEQLMAKGDVRDI--------NQQPIGTGPFVFQRYQKDSQIRYKGNKEFWDP-SR 231

Query: 218 GNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQ 277
             +D+L  A++ + + R+  L +    +     P D   +K  K + +   PG  +    
Sbjct: 232 VKIDQLIFAIVTDASARMQKLKANECQVSVNPRPADLASLKADKSLQVIEKPGFNLGYIS 291

Query: 278 MNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR-FD 336
            N    P L  ++VRQA+  A+N + I++ V +GA   A    P     Y++++K   +D
Sbjct: 292 YNVRHEP-LGKLQVRQALDMAVNKKAIINAVYQGAGQLAVNAMPPTQWSYDDSIKDAPYD 350

Query: 337 LNKAKELMKEAGYEKGFNLTMIA-PNNRYVND--EKIAQAASAMLSKIGIKVDLKTMPKA 393
             KA+ L++ AG ++G  LT+ A P  R  N   + +A+   A  +K+GIKV + +    
Sbjct: 351 PEKARTLLRAAGVKEGTELTLWAMPVQRPYNPNAKLMAEMLQADWAKVGIKVKIVSYEWG 410

Query: 394 QYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVN 453
           +Y         D+ +IGW  D  D  N+      T  S    G  N   + + + D L+ 
Sbjct: 411 EYLKRTKNGEHDISLIGWTGDNGDPDNWLG----TLYSCDAIGGNNYSMWCDKKYDDLIK 466

Query: 454 AANEETDLEKRSTMLKKVEEILYNEAAFVPL 484
            A   TD  KR+ + ++ +  L  +    P+
Sbjct: 467 DAVATTDRVKRTELYQRAQRYLKEQVPITPI 497