Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., peptide-binding periplasmic ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  254 bits (648), Expect = 7e-72
 Identities = 166/507 (32%), Positives = 256/507 (50%), Gaps = 18/507 (3%)

Query: 4   MKNKLALAL-IAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFT 62
           M  KL LA  +  GL+    A  +      D  S+DP+      TL   + V++ L+R+ 
Sbjct: 1   MMKKLGLAATMLMGLTLSGHAETLKWGAARDIYSLDPYSYGDSYTLSFLNHVYEGLVRYD 60

Query: 63  QKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKES-ADFKGIF 121
             ++ EP LAESW+ V +   RF LRKGVKFH G +FTADDV+ +  R+ +  +  +G  
Sbjct: 61  ANLKIEPALAESWETVSDTVWRFHLRKGVKFHDGAEFTADDVLASLKRVSDPVSPLRGNL 120

Query: 122 EPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSF 181
               S  KVDD+TI+I+ +G YPL+ N  T I   D+ +    T + +   ++      +
Sbjct: 121 PAYKSSKKVDDHTIDIELSGPYPLLLNDLTNIHVFDAGWL--KTNNSEKPTDVGAKIEGY 178

Query: 182 ASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSG 241
           A+ + +GTGPF + +R    K    +NP++WDK SK NVD++    I   ATRVAALLSG
Sbjct: 179 ATYHTNGTGPFKLESRVPDSKTVLVKNPDWWDKTSKSNVDRIEFTPITSAATRVAALLSG 238

Query: 242 GVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPAL--------KDVRVRQ 293
            V+        D  R++     DL  M  T + T  +  N  P L         D+RVRQ
Sbjct: 239 EVNFTENAPSQDLPRLQAQP--DLKVMERTDLRTVMVGFNRKPELANGSENKFNDLRVRQ 296

Query: 294 AIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKP--RFDLNKAKELMKEAGYEK 351
           A  +A++ + I  +VM+G + TA         GY   L     FD   +K+L+ EAG   
Sbjct: 297 AFAHALDRDLIQQRVMRGKSRTAGAVVAPEIPGYAPELDTTLAFDPALSKKLLAEAG-AS 355

Query: 352 GFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGW 411
            +  T++   + YVN+E++ Q    +LS+ G K  L   P A   P+     +D+ +IGW
Sbjct: 356 DYPFTLVCTTDAYVNEEELCQGLVNLLSRAGFKPQLDIAPTAAQAPKRTSGKSDVYLIGW 415

Query: 412 HPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKV 471
             +     +++  L M +      G +N G +S  E+DKL+  A+ E D  KR  +  K 
Sbjct: 416 ATEPM-LDSYSILLQMIQTKTANAGVFNWGGWSYPEIDKLIVQASTEMDRTKRLALQSKA 474

Query: 472 EEILYNEAAFVPLHFQDPSWAAKNTLD 498
            +++ +E   +PLH Q  +W   N +D
Sbjct: 475 LQMVKDEIVMLPLHQQPMAWVMSNKID 501