Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., peptide-binding periplasmic ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  234 bits (597), Expect = 6e-66
 Identities = 157/494 (31%), Positives = 251/494 (50%), Gaps = 18/494 (3%)

Query: 9   ALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFTQKMEFE 68
           A A+ A  L+  A AA +     AD  S+DP    S   L   + +++ LIR+    E E
Sbjct: 14  AAAIAAPALATSASAATLRWGSRADIYSLDPDSVPSTSNLAFLNHIYEGLIRYGPNFEIE 73

Query: 69  PRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKE-SADFKGIFEPLVSL 127
           P LA  W+ +D++  RFTLRKGVKFH G DFTADDVV + NR+ + ++  +G     V +
Sbjct: 74  PALATEWKLIDSKHWRFTLRKGVKFHDGADFTADDVVASMNRVSDPTSPLRGNIPLYVGV 133

Query: 128 TKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFASENIS 187
            KVDD+T++I+ +    L  N  + IF   +K+     A+     +I  +  ++A+ N +
Sbjct: 134 KKVDDFTVDIEVSAPSALFLNDMSNIFMFSAKWLKDNNAE--KPTDIASNTENYATHNTN 191

Query: 188 GTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIA 247
           GTGPF + +R    K     N  +WD+  K N+D++    I   ATRVAALLS  +D++ 
Sbjct: 192 GTGPFKLESRVPDSKTVLLVNDQWWDQ-KKHNLDRIEYIPISSAATRVAALLSSEIDLLD 250

Query: 248 PVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNS-------NPALKDVRVRQAIVYAIN 300
                D  R++ + G+ +      R +    N          NP L D+RVRQA+  +I+
Sbjct: 251 SAPIQDLPRLESSPGITVSKRTELRTVFIGFNGKEKLEDGRPNPFL-DLRVRQAVEASID 309

Query: 301 NEGIVDKVMKGAATTAAQQSPVGYAGYNENLK--PRFDLNKAKELMKEAGYEKGFNLTMI 358
            + I  K+M+G A  +        AGY ++L      D   A++L+++AG +K    T +
Sbjct: 310 RDLINKKIMRGLARPSGSLIAPEIAGYAKSLDTYQPADSKLAQKLLEDAG-QKDLAFTYL 368

Query: 359 APNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGW-HPDTED 417
             N+  +N+E I    + ML + G +  +   P+A   P+     ADM  + W +  T D
Sbjct: 369 CMNDESINEEDICSGIANMLKRAGFQPTIDMGPRAVQQPKRTNGKADMFNLSWANEPTLD 428

Query: 418 SANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYN 477
           + +    +  TR  +TG   Y  G +S  E+D LV  A +E D  KR  + ++  +I  +
Sbjct: 429 AYSLLSQVLSTRSGSTGVSNY--GGWSYPELDDLVKKAAQEPDTAKRLALEEQALKIAKD 486

Query: 478 EAAFVPLHFQDPSW 491
           +A  +PLH Q  +W
Sbjct: 487 KAILIPLHQQPIAW 500