Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score =  150 bits (379), Expect = 1e-40
 Identities = 138/514 (26%), Positives = 225/514 (43%), Gaps = 46/514 (8%)

Query: 1   MKTMKNKLALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLS-HMVFDPLI 59
           MK +   LA   IA  ++  A +       +  P   DP    +G T   + H V+  L+
Sbjct: 1   MKKLTTLLAATAIATLMAGTAWSKTFVFCSEGSPEGFDPGLYTAGTTFDAAAHTVYSRLL 60

Query: 60  RFTQ-KMEFEPRLAESWQRVDNET-MRFTLRKGVKFHSGNDFT------ADDVVWTFNRL 111
            F +   E EP LAESW   D+     F LR GVKF +   FT      ADDV+++  R 
Sbjct: 61  EFKKGTTETEPGLAESWTISDDGLEYTFKLRPGVKFQTTEFFTPTRELNADDVIFSIERQ 120

Query: 112 KESAD---------------FKGIFEPLVSLTKVDDYTIEIKTAGTY-PLIENVATYIFP 155
            +S                   G+ E L S+ KVDD T++IK      P + N+A     
Sbjct: 121 WKSDHPWHGYVTGGSWEYFAGMGLPELLESVEKVDDMTVKIKLKRKEAPFLANLAMPFAS 180

Query: 156 MDSKFYTGTT-ADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDK 214
           + SK Y     A+GK             ++   GTGPF     +Q   + ++ +P++W  
Sbjct: 181 IMSKEYADKLQAEGKMNQ---------LNQMPLGTGPFAFVGYQQDAVIRYKAHPDFW-- 229

Query: 215 ASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVI 274
             K  +D L  A+  + A R   L +G   ++   +  D + +K    + +    G  V 
Sbjct: 230 GGKQKIDDLVFAITTDAAVRFQKLQAGECHLMPYPNAADVEAMKADPNLKVMEQAGLNVA 289

Query: 275 TFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLK-P 333
               N  + P    V VR+A+  AIN + IVD V +G AT A    P     YNE+++  
Sbjct: 290 YLAYN-TTQPPFDKVEVRKALNKAINKQAIVDAVFQGQATPATNPIPPTMWSYNEHIEDD 348

Query: 334 RFDLNKAKELMKEAGYEKGFNLTMIAPNNR--YVNDEKIAQAASAMLSKIGIKVDLKTMP 391
            +D   AK+++++AG +         P  R   +N  + A+   A  +K+G+KV++ +  
Sbjct: 349 TYDPEAAKKMLEDAGVKDLSMKVWAMPVARPYMLNARRAAELMQADFAKVGVKVEIVSYE 408

Query: 392 KAQYWPEFDKCAAD-MLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDK 450
            A+Y  +      D  +++GW  D  D  NF + L          G  N   + + E D+
Sbjct: 409 WAEYLEKSKAKDRDGAVILGWTGDNGDPDNFLDTLL----GCDAVGGNNRAQWCDKEFDE 464

Query: 451 LVNAANEETDLEKRSTMLKKVEEILYNEAAFVPL 484
           LV  A E +D+ +R+ + ++ + +   EA +  L
Sbjct: 465 LVTKAKEASDVAERTKLYEEAQVVFKREAPWATL 498