Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 525 a.a., extracellular solute-binding protein, family 5 (NCBI) from Rhodospirillum rubrum S1H

 Score =  140 bits (352), Expect = 1e-37
 Identities = 122/483 (25%), Positives = 212/483 (43%), Gaps = 48/483 (9%)

Query: 54  VFDPLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKE 113
           V++ LI     ++ EP LA +WQ V +   R TLR+GV+FH G  FTADDVV +  R   
Sbjct: 46  VYETLIGRDSDLDLEPALATAWQAVTDLRWRVTLRRGVRFHDGAAFTADDVVASLER--A 103

Query: 114 SADFKGIFE---PLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKN 170
           SA   G+ E   P+  + +VDD T+++ T    P +      I  +D  +     AD   
Sbjct: 104 SARGGGLAEALAPVRRVRRVDDTTVDLYTQTPTPDLPQRLALIRILDDGWI--ARADPAM 161

Query: 171 KAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGN----------- 219
            A              +GTGPF V     G  +    N ++W +    +           
Sbjct: 162 PA--------------NGTGPFRVDRFTPGGAVTLVANGDWWGRTIPADPLGTTAPPAPR 207

Query: 220 VDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMN 279
           +++ TL      A R+  LL G VD+   + P     +    G+    + GTR +   M+
Sbjct: 208 LERATLIPAARPADRLRLLLEGKVDLALDLPPAVVPPLAATPGLRALVIGGTRTVMLGMD 267

Query: 280 QNSNP---------ALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGY--N 328
           Q   P           +D  +R+A++ A++   I  ++    AT AA  +    AG    
Sbjct: 268 QRPPPLGAARGQGSPFRDRLLREAVLRAVDMTDIDQRLFANQATPAALIAGPMIAGVPAA 327

Query: 329 ENLKPRFDLNKAKELMKEAGY-EKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDL 387
            +++P  D ++A+ L+ EAG    G ++T+  P   ++ND  +  A +  LS++GI   +
Sbjct: 328 ADIRPAADPDRARALLAEAGVGPAGVSVTLDCPLGFFLNDGALCDAIATSLSEVGIHTAV 387

Query: 388 KTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANFTEFLTMTRDSN----TGKGQYNCGYY 443
            T     ++P   +  +   + G+ P T D  +    L     ++     G GQ N   Y
Sbjct: 388 ATRLAENHFPRVLRGESRFFLTGYQPLTLDILDPLRALAACPPTDGSPKDGFGQANGAGY 447

Query: 444 SNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPII 503
            +  VD+L+    +E    ++S +  ++   L ++  +VPLH +   W A+  + +    
Sbjct: 448 CDPSVDRLIRRLADEMIPARQSALAAEIVLKLRDDVVYVPLHQEPVIWGARADIGLRQRA 507

Query: 504 NGM 506
           +G+
Sbjct: 508 DGV 510