Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 529 a.a., extracellular solute-binding protein, family 5 (NCBI) from Rhodospirillum rubrum S1H

 Score =  159 bits (401), Expect = 3e-43
 Identities = 139/504 (27%), Positives = 221/504 (43%), Gaps = 44/504 (8%)

Query: 9   ALALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQL-SHMVFDPLIRFTQ-KME 66
           A A+I A  + GA A  +    +  P   +P    +G T    S  +FD L+ F +   E
Sbjct: 9   ASAVILAMAASGAQAKTLVYCSEGSPEGFNPAFYTTGTTFDATSKNIFDKLVLFKRGTTE 68

Query: 67  FEPRLAESWQ-RVDNETMRFTLRKGVKFHSGN------DFTADDVVWTFNR-LKESADFK 118
            EP LAESW+   D +T  F LRKGV FH  +       F ADDV+W+F R LK+   + 
Sbjct: 69  IEPGLAESWEVSPDGKTYTFHLRKGVTFHDSDIFKPTRQFNADDVIWSFERQLKKDHPYH 128

Query: 119 GI-------FEP------LVSLTKVDDYTIEIKTAGTY-PLIENVATYIFPMD-SKFYTG 163
            +       FE       L  + KVDDYT+    +    P++ N+A     MD +  ++ 
Sbjct: 129 AVSGGTYDYFEGMSMNTLLEKIEKVDDYTVVFHLSRPEAPMLANLA-----MDFASIFSA 183

Query: 164 TTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKL 223
             AD   KA   +       +   GTGPF     ++  ++ ++ NP YW    K  +D+L
Sbjct: 184 EYADKMMKAGTPE----VVDQKPIGTGPFMFRGYQKDAQIRYEANPTYWQ--GKAAIDRL 237

Query: 224 TLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSN 283
              +  + + R A L +G   ++   +P D + +K  K V+L    G  V     N    
Sbjct: 238 VFVITPDASVRYAKLKAGECHVMPYPNPADLEAMKTDKAVNLMHQEGLNVGYLAYNVEKK 297

Query: 284 PALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLK-PRFDLNKAKE 342
           P   DVRVR+A+  AI+ + I+D V +GA T A    P     YN+ +K   FD   AK+
Sbjct: 298 P-FDDVRVRKALNLAIDKKAIIDAVYQGAGTAATNPIPPTIWSYNKAVKDDAFDPAAAKK 356

Query: 343 LMKEAGYEKGFNLTMIAPNNRYVND--EKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFD 400
           L+ EAG +         P  R  N    ++A+   A    +G+  ++ +    +Y     
Sbjct: 357 LLAEAGVKDLKTTIWAMPVQRPYNPNARRMAEILQANWKAVGVDAEITSYEWGEYLKRAK 416

Query: 401 KCAADMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETD 460
               +  + GW  D  D  NF   L +  D+  G    N   + +   + L+  A   T 
Sbjct: 417 AGEHETALFGWTGDNGDPDNFLAVL-LGCDAIPGN---NYARWCDKSFENLIQKAKIATS 472

Query: 461 LEKRSTMLKKVEEILYNEAAFVPL 484
            E+R  + ++ + I   +A +  +
Sbjct: 473 QEERVKLYEEAQVIFKEQAPWATI 496