Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  145 bits (366), Expect = 4e-39
 Identities = 130/484 (26%), Positives = 228/484 (47%), Gaps = 49/484 (10%)

Query: 31  DADPVSMDPHEQLSGGTLQL-SHMVFDPLIRFTQKM-EFEPRLAESWQRVDNETM-RFTL 87
           + +P S +P    SG T+   S  ++D L+ +  +  E  P LA SW   D+E +  F L
Sbjct: 38  EGNPESFNPQLVTSGTTVDATSQQLYDGLVDYDARTGEMTPSLATSWHLSDDEKVYTFEL 97

Query: 88  RKGVKFHSGNDFT------ADDVVWTFNRLKESAD------------FK--GIFEPLVSL 127
           R+ V+FH  + FT      ADDV+++FNR+ ++ +            F+  G  E +  +
Sbjct: 98  RQDVQFHRSDIFTPSRNFNADDVLFSFNRIIDTDNPYHFVSKSGYPFFQSIGFAELIDDI 157

Query: 128 TKVDDYTIEIKTAGT-YPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFASENI 186
            K+DDY +           + N+AT    + SK Y           ++ + G     + +
Sbjct: 158 EKIDDYHVAFHLKHKDASFLSNLATGFAVILSKEYAD---------QLQRTGQEELLDKL 208

Query: 187 S-GTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDM 245
           + GTGPF +    +   + + RNP YW    +  VD+L   +  +  TR+A L++G  ++
Sbjct: 209 AIGTGPFRLIDYVKNDFIRYYRNPYYWRLTPE--VDQLVFDITPKSTTRLAKLITGDCNV 266

Query: 246 IAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIV 305
            A     +   + + + +++ ++PG  V  +  N    P   DVRVR+A+ +AI+ E I+
Sbjct: 267 SALPKAGELPVVIEKEDLEVESLPGFNVAFWAFNTERIP-FNDVRVRRALAHAIDKENIL 325

Query: 306 DKVMKGAATTAAQQSPVGYAGYNENLKP-RFDLNKAKELMKEAGYEKGFNLTM---IAPN 361
             V +  A  A    P     Y+ N K   ++  KA+EL+ EAG +   NLT+     P 
Sbjct: 326 RAVYQKTAEEAVGLLPPLSWAYSANEKMIDYNPEKARELLDEAGVK---NLTIDIWAMPV 382

Query: 362 NRYVNDE--KIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSA 419
            R  N    K A+   A L+ IG+KV++     + +  +  +   D ++IGW+ D  D  
Sbjct: 383 ARIYNPNAHKTAELIQADLANIGVKVNIVNYDWSVFNQKLSQHGYDSVLIGWNADNSDPD 442

Query: 420 NFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEA 479
           NF  F  +   ++ G    N   + +   D ++NAA   TD EKR+ + ++ E+ +  + 
Sbjct: 443 NF--FTPILSCASVGSNS-NRSRWCDPAFDHILNAAKSTTDREKRARLYQEAEQYVAEQV 499

Query: 480 AFVP 483
             +P
Sbjct: 500 PMLP 503