Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., ABC-type dipeptide transport system, periplasmic component from Dechlorosoma suillum PS

 Score =  223 bits (568), Expect = 1e-62
 Identities = 164/519 (31%), Positives = 249/519 (47%), Gaps = 46/519 (8%)

Query: 11  ALIAAGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFTQKMEFEPR 70
           AL AAGLS G +AAD++        S+DPH   +   + ++   F+ L+   +  +  P 
Sbjct: 20  ALRAAGLSVG-LAADVS--------SLDPHYLNAAPNIAVASHFFETLVAVDKDGQLVPG 70

Query: 71  LAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNR----LKESADFKGIFEPLVS 126
           LA+SWQ ++  T  F LR GVKFH G+  TA+DVV++ +R     +    F G    +  
Sbjct: 71  LAQSWQAINPTTWEFKLRPGVKFHDGSPLTAEDVVFSLDRPASLTQSPGPFTGFTRAISG 130

Query: 127 LTKVDDYTIEIKTAGTY-PLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFASEN 185
              VD +T+ + TA  Y PL  ++A+ IF +  K     T +  N  +            
Sbjct: 131 KKVVDAHTLRLTTAQPYGPLPLDLAS-IFIVSKKAAAKATTEDFNSGKA----------- 178

Query: 186 ISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDM 245
           + GTGPF +    +G  +E  R   YW +  K   D LTL ++  DA R+AALL+G VDM
Sbjct: 179 LVGTGPFRLVKFRRGEAVELARFDGYWGE--KPAWDTLTLRILPADAARLAALLAGQVDM 236

Query: 246 IAPVSPNDYQRIK-DAK--------------GVDLFTMPGTRVITFQMNQNSNPALKDVR 290
           I  V   D  R+K DA+               +DLF      V        +   LKD++
Sbjct: 237 IEGVPGADVARLKKDARFRLEQRVSWRTLFLQLDLFRDASPFVTDLAGKPLAKNPLKDLK 296

Query: 291 VRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR-FDLNKAKELMKEAGY 349
           VRQA+  +IN E +  + + G    A++    G  G+ +      +D   AK L+ EAGY
Sbjct: 297 VRQALSRSINREALAARTLDGLGVPASRLVAPGIPGHGQQPAAEPYDPEGAKRLLAEAGY 356

Query: 350 EKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMI 409
            +GF LT+  PNNRY+NDE+I Q  +    +IG+K  ++T+P A Y+           ++
Sbjct: 357 PQGFALTLHGPNNRYLNDEQILQTLAQFFGRIGVKTKVETLPLAAYFGRLRHADFSAALL 416

Query: 410 GWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLK 469
           GW   + D A  T  L  T D  +G G +N G +S+  VD  + +A   TD  +RS   +
Sbjct: 417 GWGSLSGDFALRT--LLGTPDEKSGWGAWNWGRFSDTRVDADIRSALASTDPARRSRAAE 474

Query: 470 KVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDF 508
              +    +   +PLH Q  +WA +  L     I+   F
Sbjct: 475 AAMDQAMQQLPVIPLHHQVATWALRAGLTYPARIDEFTF 513