Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., extracellular solute-binding protein family 5 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  587 bits (1512), Expect = e-172
 Identities = 301/516 (58%), Positives = 370/516 (71%), Gaps = 8/516 (1%)

Query: 8   LALALIAAGLSFG--AMAAD---ITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFT 62
           L L ++AA L+FG  A AA+     V   +DP S+DPH QLSG  L  SH VFDPL+R+T
Sbjct: 7   LLLMMLAAVLAFGPKAEAAEGKTFRVGISSDPESLDPHMQLSGPMLAYSHWVFDPLVRWT 66

Query: 63  QKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESADFKGIFE 122
           Q M+FEPRLAE W++++  TMRF LRKGVKFHSGN  TA DV WT  RLKES DFKG++ 
Sbjct: 67  QDMKFEPRLAEKWEQINPTTMRFHLRKGVKFHSGNPLTAADVAWTVKRLKESPDFKGLYV 126

Query: 123 PLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNSFA 182
                  VDD TI+I T   Y L+ N+ATYIFPMDSKFY+GT A G+ K  +VK+G SFA
Sbjct: 127 KFAEPKVVDDNTIDIITTEPYGLVMNLATYIFPMDSKFYSGTDAAGQPKGAVVKNGASFA 186

Query: 183 SENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGG 242
           +EN SGTGPF V  RE GVKL  + NPNYW K   GNVD + L  IK +ATRVAA+L G 
Sbjct: 187 NENASGTGPFMVAQREHGVKLVLKANPNYWGK--HGNVDTIELTPIKNEATRVAAILKGD 244

Query: 243 VDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQAIVYAINNE 302
           VD I PV   DY ++     V+L TM  TR+ITFQ+NQ  NPAL + +VR+AI+ A ++ 
Sbjct: 245 VDFITPVPVQDYDQLAKNPDVELITMASTRIITFQLNQKRNPALANPKVREAIIAATDHA 304

Query: 303 GIVDKVMKGAATTAAQQSPVGYAGYNENLKPRFDLNKAKELMKEAGYEKGFNLTMIAPNN 362
           GIV K+MKG      QQ+P GY GY  +LKPRFDL KA++LMKEAGYEKG  LTMIAPNN
Sbjct: 305 GIVAKIMKGYTVVTQQQAPKGYPGYIADLKPRFDLAKAQKLMKEAGYEKGLELTMIAPNN 364

Query: 363 RYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANFT 422
           RYVNDEK+AQA  +M++KIGIKV+LKTMPKAQYW E+D   AD+ MIGWHPDTED+AN+ 
Sbjct: 365 RYVNDEKVAQAFVSMMAKIGIKVNLKTMPKAQYWDEYDAQVADIQMIGWHPDTEDTANYG 424

Query: 423 EFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFV 482
           E+L M  + +TG GQYN G Y N + D L+  AN  TD +KR  +L++ E++ Y+EAAFV
Sbjct: 425 EYLLMCANKDTGMGQYNSGNYCNKKYDALIEEANRTTDPKKRDALLQESEKLAYDEAAFV 484

Query: 483 PLHFQDPSWAAKNTLDIA-PIINGMDFPYFGDLVVK 517
           PLH +  SWAA+ T+  A  IIN  DFPYFGD+V+K
Sbjct: 485 PLHMEPLSWAARKTVTNAKAIINVQDFPYFGDVVMK 520