Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., putative D,D-dipeptide-binding periplasmic protein DdpA from Enterobacter sp. TBS_079

 Score =  140 bits (353), Expect = 1e-37
 Identities = 128/492 (26%), Positives = 223/492 (45%), Gaps = 26/492 (5%)

Query: 4   MKNKLALALIAAGLSFGAMAADITVAYD-------ADPVSMDPHEQLSGGTLQLSHMVFD 56
           MK  L   LIAA L+  A  A   V  D       ADP ++DP   +      +++  + 
Sbjct: 1   MKTTLLTTLIAASLALSAPVALAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPAYQ 60

Query: 57  PLIRFTQ-KMEFEPRLAESWQRV-DNETMRFTLRKGVKFHSGNDFTADDVVWTFNRL-KE 113
            L+++     E E  L+  W+   D +   FTL    KF  G   TA+ V  +F RL K 
Sbjct: 61  RLVKYKPGSTEVEGDLSTGWKASEDQKEWTFTLTDNAKFADGTPVTAEAVKLSFERLLKL 120

Query: 114 SADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAE 173
           S      F   + +  VD +T++      + L +  A +++ + +            KA 
Sbjct: 121 SQGPSEAFPKDLKIDAVDPHTVK------FTLSQPFAPFLYTLANDG-ASIVNPAVLKAN 173

Query: 174 IVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDAT 233
                  + ++N +G+GPF + + ++G +L    NP++     K +  ++++ +I E A+
Sbjct: 174 AADDARGYLAQNTAGSGPFMLKSWQKGQQLVLVPNPHW--AGEKPHFKRVSVKIIGESAS 231

Query: 234 RVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQ 293
           R   L  G +D+   +  +    +K    V +   P  RV    +N NS   L  V +R+
Sbjct: 232 RRLQLSRGDLDIADSLPVDQLSALKQEGKVAVAEYPSLRVTYLYLN-NSKAPLNQVDLRR 290

Query: 294 AIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNEN-LKPRFDLNKAKELMKEAGYEKG 352
           A+ +A + +G+V  ++ G         P G  G++   ++  FD  KAK  +++   +K 
Sbjct: 291 AVSWATDYQGMVKGILSGNGKQMRGPIPDGMWGFDATAMQYSFDEAKAKAALEKVK-DKP 349

Query: 353 FNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWH 412
            +LT +  +N   N E IA +  A L KIGI V L+ +  A       K   D+ +  W 
Sbjct: 350 TSLTFLYSDND-PNWEPIALSTQASLGKIGINVKLEKLANATMRDRVGKGDYDIAIGNWS 408

Query: 413 PDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVE 472
           PD  D   F  +     +S+      N  +Y N EVD L+ AA + TD  +R+   ++ +
Sbjct: 409 PDFADPYMFMNYWF---ESDKKGLPGNRSFYENKEVDALLKAALKTTDQAERTHDYQQAQ 465

Query: 473 EILYNEAAFVPL 484
           +++ +EAA+V L
Sbjct: 466 KVVIDEAAYVYL 477