Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  584 bits (1505), Expect = e-171
 Identities = 294/522 (56%), Positives = 376/522 (72%), Gaps = 7/522 (1%)

Query: 1   MKTMKNKLALALIA----AGLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFD 56
           MK +   L+LAL A     G++  A      +A  +DP S+DPH QLSG  L  SH VFD
Sbjct: 1   MKRLIALLSLALAAMLALGGIANAAEGKTFRIAMASDPESLDPHMQLSGPILAYSHWVFD 60

Query: 57  PLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESAD 116
           PL+R+T  M+FEPRLAE W++++  TMRF LRKGVKFHSGN FTA DV WT +RLK+S D
Sbjct: 61  PLVRWTPDMKFEPRLAEKWEQINPTTMRFHLRKGVKFHSGNPFTAKDVAWTLDRLKKSPD 120

Query: 117 FKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVK 176
           FKG+F        +DD TI+I T   Y L+ N+ATYIFPMDSKFYTGT A G+ K  IVK
Sbjct: 121 FKGLFIKFAEPKVIDDNTIDIITTEPYGLVMNLATYIFPMDSKFYTGTDAKGQPKDAIVK 180

Query: 177 HGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVA 236
            G SFA++N SGTGP++V  REQGVKL  + N  YW K  +GNVD + L  IK +ATRVA
Sbjct: 181 SGYSFANDNASGTGPYSVAEREQGVKLILKANKGYWGK--RGNVDTIELTPIKNEATRVA 238

Query: 237 ALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVRVRQAIV 296
           A+L G VD I+PV   DY ++     V+L TMP  R+IT Q+NQ   P   D RVR+AI+
Sbjct: 239 AILKGDVDFISPVPVQDYDQLSKNADVELITMPSARIITIQLNQKKFPQFADKRVREAII 298

Query: 297 YAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPRFDLNKAKELMKEAGYEKGFNLT 356
            A +  GIV KVMKG  TT  QQ+P G+AGY  +LKPR++L+ AK+LMK+AG+EKGF ++
Sbjct: 299 AATDTAGIVAKVMKGYTTTTQQQAPKGFAGYIADLKPRYNLDNAKKLMKDAGFEKGFEVS 358

Query: 357 MIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTE 416
           MIAPNNRYVNDEKIAQA  +M+++I IKV+LKTMPKAQYW +FD   AD+ MIGWHPDTE
Sbjct: 359 MIAPNNRYVNDEKIAQAFVSMMARINIKVNLKTMPKAQYWDQFDAQVADIQMIGWHPDTE 418

Query: 417 DSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILY 476
           D+AN++E+L MT + +TG GQYN G Y+N + D L++AAN ETD  KR  +LK+ E++ Y
Sbjct: 419 DTANYSEYLLMTPNKDTGMGQYNSGNYANPKFDALIDAANRETDPAKRDALLKESEQMAY 478

Query: 477 NEAAFVPLHFQDPSWAAKNTLDIA-PIINGMDFPYFGDLVVK 517
           N+AAFVPLH++  SWAA+ T+  A  ++N  DFPYFGDL+++
Sbjct: 479 NDAAFVPLHWEPLSWAARKTVKNAKQVVNAQDFPYFGDLMMQ 520