Pairwise Alignments

Query, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., extracellular solute-binding protein family 5 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  280 bits (716), Expect = 9e-80
 Identities = 184/526 (34%), Positives = 279/526 (53%), Gaps = 26/526 (4%)

Query: 5   KNKLALALIAAGLS-FGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRFTQ 63
           K  L LA  A  L+   A A  +  A   D +++DPH Q  G T  L+H +++PLI    
Sbjct: 3   KTTLLLATSALVLTPILASAETLRWARAGDSLTLDPHAQNEGPTHTLAHQIYEPLIIRDH 62

Query: 64  KMEFEPRLAESW--QRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLK-ESADFKGI 120
             +F+  LA  W  +  D     F LR+GV FH G+ FTA+DVV++F R K E++  K +
Sbjct: 63  FGQFQGALATEWAPKPDDPSVWVFKLREGVTFHDGSAFTAEDVVFSFERAKSETSAMKEL 122

Query: 121 FEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKHGNS 180
              +  +  VDD T+E  T G  P++ N  T +F MD  +   T A+G  + + + +G +
Sbjct: 123 LTSISEVRAVDDMTVEFVTEGPNPILPNNFTNLFIMDKGW---TEANGVTRVQDIANGET 179

Query: 181 -FASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKG-NVDKLTLAVIKEDATRVAAL 238
            FA+ N  GTGP+ +T+RE  V+     NP+YW        V ++    I+  ATRVAAL
Sbjct: 180 TFAATNAMGTGPYVLTSREPDVRTVLTINPDYWGADDFPLQVTEIIYTPIQNAATRVAAL 239

Query: 239 LSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMN-----------QNSNPALK 287
           LSG VD I  V   D +R+    G+++ T    RVI   MN           + +NP L 
Sbjct: 240 LSGEVDFIQDVPVQDLERVAGTDGLEVQTAAQNRVIFLGMNSGADDLDSDNVEGANP-LA 298

Query: 288 DVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLK--PRFDLNKAKELMK 345
           D RVR+A+  AIN + I   VM+G +  A   +P    G+   +      D++ AK LM+
Sbjct: 299 DARVRKAMNMAINRDAIKQVVMRGQSAPAGMIAPPFVNGWTAEMDGAAMTDIDAAKALME 358

Query: 346 EAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAAD 405
           EAGY  GF++ +  PN+RY+NDE I QA   ML +IG+ V+L   PKAQ++P       +
Sbjct: 359 EAGYGDGFSIQLDCPNDRYINDEAICQAVVGMLGQIGVTVNLDAKPKAQHFPLIQNGETN 418

Query: 406 MLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKRS 465
             M+GW   T DS     FL  TR+ +  +G +N   +SNAEVD  + +   ETDL  R+
Sbjct: 419 FYMLGWGVPTYDSEYVFNFLVHTREGD--RGSWNNTGFSNAEVDAKIVSLASETDLAVRN 476

Query: 466 TMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDFPYF 511
             + ++ +++ +E  ++P+H Q  +W   + +   P ++  D P F
Sbjct: 477 QTIAEIWQVVQDEQLYLPIHHQVLNWGNTSAVGY-PNVSPEDDPKF 521