Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  421 bits (1081), Expect = e-122
 Identities = 228/555 (41%), Positives = 350/555 (63%), Gaps = 35/555 (6%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPP- 60
           +L+EV++L +E+         V+ ++ DI+RGE + +VGESG+GKS   ++++ LL  P 
Sbjct: 5   NLIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPL 64

Query: 61  GTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM 120
                G +   G+ + GL  + +R +RG++I  IFQ+PMTSLNPL ++E Q+ E +  + 
Sbjct: 65  AHHPTGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHK 124

Query: 121 QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEP 180
            +S + A +R L L++ VGIP+P  RLK  PH+ SGG RQRV+IA+ALA EP+L+IADEP
Sbjct: 125 GLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEP 184

Query: 181 TTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAK 240
           TTALDV++Q +IL L+++L  +  +  +L++HD+ +V  +  RV VM RG +VE     +
Sbjct: 185 TTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCEE 244

Query: 241 VLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG 300
           +   P+HPYTR L+ A P            S    +  + P                   
Sbjct: 245 LFRAPQHPYTRELLGAEP------------SGTPASNVVGP------------------- 273

Query: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
           PLL+VE++ + F  K  LF+   +Y++A + + F++ +G+T G+VGESGSGKST+   I 
Sbjct: 274 PLLQVEDLKVWFPIKKGLFKRTVDYIKAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAIL 333

Query: 361 GLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRF 420
            L     G + FEG  L +L ++ + RPLRR+MQ+VFQ+P+ S++PRM +  I+ E +R 
Sbjct: 334 RLIGSQGG-IRFEGKQLDSL-TQQQVRPLRREMQVVFQDPFGSLSPRMCVSQIVGEGLRI 391

Query: 421 HKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDE 480
           HK+  +E+E  Q +   L+ VGL      +YPHEFSGGQRQRI+IARAL  +P L++ DE
Sbjct: 392 HKI-GTEAEQEQAIIAALKEVGLDPETRNRYPHEFSGGQRQRIAIARALVLKPALILLDE 450

Query: 481 PTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTE 540
           PTSALD +VQ Q++ LL+ LQ + NLT LFISHDL V++ +  ++ V++ G ++E     
Sbjct: 451 PTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKHGQVVEQGDAR 510

Query: 541 QLFTDPQHEYSKKLI 555
            +F  PQH Y+++L+
Sbjct: 511 SIFAAPQHPYTQQLL 525



 Score =  179 bits (453), Expect = 3e-49
 Identities = 116/269 (43%), Positives = 159/269 (59%), Gaps = 17/269 (6%)

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           L++V ++ + F+      E R+  V+    VSF +  GET  LVGESGSGKS  A  I  
Sbjct: 6   LIEVRDLAVEFIVG----ERRQRVVEG---VSFDIKRGETLALVGESGSGKSVTAHSILR 58

Query: 362 L------YQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIA 415
           L      + P  G + + G +L  LK +  R     ++ M+FQ P TS+NP   I   I 
Sbjct: 59  LLPYPLAHHPT-GTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQIN 117

Query: 416 EPIRFHKLTRSESETRQIVNDLLEHVGLGKM-AGLK-YPHEFSGGQRQRISIARALATRP 473
           E +  HK    +  TR+ + +LLE VG+ +    LK  PHE SGGQRQR+ IA ALA  P
Sbjct: 118 EVLGIHKGLSGKVATRRTL-ELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEP 176

Query: 474 RLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTL 533
            LLI DEPT+ALDV+VQ +IL LLK LQ  L +++L ISHDL ++R++  RV VMQ G +
Sbjct: 177 ELLIADEPTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCI 236

Query: 534 LEVAPTEQLFTDPQHEYSKKLISLMPEFT 562
           +E A  E+LF  PQH Y+++L+   P  T
Sbjct: 237 VEQASCEELFRAPQHPYTRELLGAEPSGT 265



 Score =  168 bits (425), Expect = 6e-46
 Identities = 93/261 (35%), Positives = 157/261 (60%), Gaps = 15/261 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           LL+V++L++ +P + G+         AV  +   + +G+ +G+VGESG+GKST+G A++ 
Sbjct: 275 LLQVEDLKVWFPIKKGLFKRTVDYIKAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILR 334

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L+   G I        G+++  L+ Q +R +R  ++  +FQDP  SL+P   V   + E 
Sbjct: 335 LIGSQGGIR-----FEGKQLDSLTQQQVRPLR-REMQVVFQDPFGSLSPRMCVSQIVGEG 388

Query: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175
           +  +   +  E  Q  ++ +K+VG+  PE R  +YPH+FSGG RQR+ IA AL  +P LI
Sbjct: 389 LRIHKIGTEAEQEQAIIAALKEVGL-DPETR-NRYPHEFSGGQRQRIAIARALVLKPALI 446

Query: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235
           + DEPT+ALD ++Q Q++ L+R L  K N+  + ++HD+ VV  ++ ++ V+  G +VE 
Sbjct: 447 LLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKHGQVVEQ 506

Query: 236 GPTAKVLGTPEHPYTRSLISA 256
           G    +   P+HPYT+ L+ A
Sbjct: 507 GDARSIFAAPQHPYTQQLLEA 527