Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  410 bits (1054), Expect = e-119
 Identities = 226/555 (40%), Positives = 346/555 (62%), Gaps = 39/555 (7%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
           +L+E+++L + +  +      V++L LDI+ GE + +VGESG+GKS   ++++ LL    
Sbjct: 10  NLIEIRDLSVAFNDQ----TVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENE 65

Query: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
               G +   G+++ G   QA+RE+RG++I  IFQ+PMTSLNPL +VE Q+ ET+  +  
Sbjct: 66  AHTSGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHKG 125

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
           +  + A QR L L+  VGI  P  RLK YPHQ SGG RQRV+IA+ALA EP+L+IADEPT
Sbjct: 126 LGGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEPT 185

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           TALDV++Q +IL L++ L ++  +  +L++HD+ +V ++  RV VM  G++VE  P   +
Sbjct: 186 TALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETL 245

Query: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301
              P+HPY+  L+ A P                   E  P D +                
Sbjct: 246 FSAPKHPYSCELLHAEPEG-----------------EALPRDDREE-------------- 274

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           +L+V+++ + F     LF  R+EY++A + +S ++  G+T G+VGESGSGKST+ + I  
Sbjct: 275 VLQVQDLRVSFPLSGGLFR-RKEYLRAVDGISLSIQRGKTLGIVGESGSGKSTLGQAILR 333

Query: 362 LYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH 421
           L + + G + F+G  L  L S+   RP R+QMQ+VFQ+P+ S++PRM +  II+E +  H
Sbjct: 334 LIE-SEGSIRFQGQALDHL-SQKALRPWRKQMQVVFQDPFGSLSPRMSVQQIISEGLEVH 391

Query: 422 KLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEP 481
           + +  E    +++  L E VGL      +YPHEFSGGQRQRI+IARAL  +P L++ DEP
Sbjct: 392 QPSSPEQCEARVIQALKE-VGLDPATRHRYPHEFSGGQRQRIAIARALVLKPALILLDEP 450

Query: 482 TSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQ 541
           TSALD +VQ Q++ LL+ LQ + +LT LFISHDL V+R +   + V++ G ++E   +  
Sbjct: 451 TSALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKVVEQGASHD 510

Query: 542 LFTDPQHEYSKKLIS 556
           +F  PQH Y+K+L++
Sbjct: 511 VFDSPQHPYTKELLA 525



 Score =  178 bits (452), Expect = 4e-49
 Identities = 98/260 (37%), Positives = 164/260 (63%), Gaps = 14/260 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHA------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDL 56
           +L+V++LR+ +P   G+        AV  ++L IQRG+ +G+VGESG+GKST+G A++ L
Sbjct: 275 VLQVQDLRVSFPLSGGLFRRKEYLRAVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRL 334

Query: 57  LSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETI 116
           +   G+I        G+ +  LS +A+R  R  ++  +FQDP  SL+P  +V+  ++E +
Sbjct: 335 IESEGSIR-----FQGQALDHLSQKALRPWR-KQMQVVFQDPFGSLSPRMSVQQIISEGL 388

Query: 117 HANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176
             +   S E+   R +  +K+VG+  P  R  +YPH+FSGG RQR+ IA AL  +P LI+
Sbjct: 389 EVHQPSSPEQCEARVIQALKEVGL-DPATR-HRYPHEFSGGQRQRIAIARALVLKPALIL 446

Query: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236
            DEPT+ALD ++Q Q++ L+R+L +K ++  + ++HD+ VV  +   + V+  G +VE G
Sbjct: 447 LDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKVVEQG 506

Query: 237 PTAKVLGTPEHPYTRSLISA 256
            +  V  +P+HPYT+ L++A
Sbjct: 507 ASHDVFDSPQHPYTKELLAA 526



 Score =  172 bits (437), Expect = 2e-47
 Identities = 103/236 (43%), Positives = 141/236 (59%), Gaps = 7/236 (2%)

Query: 331 NVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPN----AGRVTFEGIDLTALKSEHER 386
           N+   +  GE   LVGESGSGKS  A  I  L   N    +G + + G +L    ++  R
Sbjct: 29  NLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENEAHTSGSIRYRGQELVGADTQALR 88

Query: 387 RPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGL-GK 445
                ++ M+FQ P TS+NP   +   I E +  HK    ++  RQ + +LL  VG+   
Sbjct: 89  ELRGNRIAMIFQEPMTSLNPLHSVEKQIGETLMLHKGLGGKA-ARQRILELLTLVGIQNP 147

Query: 446 MAGLK-YPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDEL 504
           +  LK YPH+ SGGQRQR+ IA ALA  P LLI DEPT+ALDV+VQ +IL LLK LQ  L
Sbjct: 148 VERLKAYPHQLSGGQRQRVIIAMALACEPELLIADEPTTALDVTVQRKILLLLKSLQQRL 207

Query: 505 NLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPE 560
            +++L ISHDL ++R +  RV VM+ G ++E AP E LF+ P+H YS +L+   PE
Sbjct: 208 GMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQAPCETLFSAPKHPYSCELLHAEPE 263