Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., peptide transport ATP-binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  439 bits (1129), Expect = e-127
 Identities = 247/563 (43%), Positives = 344/563 (61%), Gaps = 24/563 (4%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPP- 60
           SLL VK+L ++  +  G    V+ L+ D+  G  + + GESG+GKS    +++ LL  P 
Sbjct: 4   SLLSVKDLTVQVATPTGPKVVVERLSFDLLPGRTLCLAGESGSGKSMTALSLMQLLPKPM 63

Query: 61  GTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM 120
             IAGG   L+GE I  L    MR +RG KIG IFQ+PMTSLNP+ TV +QL   I A+ 
Sbjct: 64  ARIAGGSATLDGEDILALPEARMRRIRGRKIGMIFQEPMTSLNPVMTVGNQLIGAITAHG 123

Query: 121 QVSAEEAYQ-RALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADE 179
             S   A + RA  L+ QV IP+PE RL QYPH+ SGG+RQR+VIA+ALA  P ++IADE
Sbjct: 124 NTSGRRAARARAAELLDQVQIPEPERRLGQYPHELSGGLRQRIVIAMALAQNPKILIADE 183

Query: 180 PTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTA 239
           PTTALDV++Q QIL LIR+L   + +  +++THDMGVV+ + D V VM  G  VE   + 
Sbjct: 184 PTTALDVTVQAQILALIRKLQADHGISVIMITHDMGVVAEMADEVLVMKHGRTVEHATSR 243

Query: 240 KVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYT 299
            +   P+  YT+ L+SAVPR                  E+   +      G++ +     
Sbjct: 244 DLFAHPQDAYTKELLSAVPRLG----------------EMAGTETPKRAAGKAVEAGSEP 287

Query: 300 G---PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIA 356
           G   P+L+VEN+ +RF  K  + +     + A   +S +V  GET  LVGESG GKST  
Sbjct: 288 GAEQPMLQVENLTVRFDIKGGILQRPVRRLHAVEGISLSVRRGETLSLVGESGCGKSTTG 347

Query: 357 RVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAE 416
           + +  L  P  G +  +G     L+     RP+ R +QM+FQ+PY S++PRM++ D++AE
Sbjct: 348 KALLNLV-PWTGDIRVDGRSTRGLRGS-TMRPILRDVQMIFQDPYASLDPRMRVGDLVAE 405

Query: 417 PIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLL 476
           P+  H L  S SE R  V  L + VGL      +YPHEFSGGQRQRI IARAL+  P+L+
Sbjct: 406 PLVIHGLA-SGSELRDRVEYLFKRVGLSPEQMKRYPHEFSGGQRQRICIARALSLSPKLI 464

Query: 477 ICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEV 536
           + DE  +ALDVS+QAQ+L+LL+D+QDE  ++ LFISHD+ V+ Q+  RV VM MG  +E+
Sbjct: 465 VADESVAALDVSIQAQVLDLLQDIQDETGVSYLFISHDMAVVEQISHRVAVMYMGRFVEM 524

Query: 537 APTEQLFTDPQHEYSKKLISLMP 559
               Q+F  PQH Y+KKL++ +P
Sbjct: 525 GTRRQIFESPQHPYTKKLMAAVP 547



 Score =  189 bits (480), Expect = 3e-52
 Identities = 107/266 (40%), Positives = 164/266 (61%), Gaps = 15/266 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           +L+V+NL + +  + G+         AV+ ++L ++RGE + +VGESG GKST G A+++
Sbjct: 293 MLQVENLTVRFDIKGGILQRPVRRLHAVEGISLSVRRGETLSLVGESGCGKSTTGKALLN 352

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L+  P T   G++ ++G    GL    MR +    +  IFQDP  SL+P   V   + E 
Sbjct: 353 LV--PWT---GDIRVDGRSTRGLRGSTMRPILRD-VQMIFQDPYASLDPRMRVGDLVAEP 406

Query: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175
           +  +   S  E   R   L K+VG+  PE ++K+YPH+FSGG RQR+ IA AL+  P LI
Sbjct: 407 LVIHGLASGSELRDRVEYLFKRVGL-SPE-QMKRYPHEFSGGQRQRICIARALSLSPKLI 464

Query: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235
           +ADE   ALDVSIQ Q+L+L++++  +  V  + ++HDM VV  ++ RVAVMY G  VE 
Sbjct: 465 VADESVAALDVSIQAQVLDLLQDIQDETGVSYLFISHDMAVVEQISHRVAVMYMGRFVEM 524

Query: 236 GPTAKVLGTPEHPYTRSLISAVPRSD 261
           G   ++  +P+HPYT+ L++AVP +D
Sbjct: 525 GTRRQIFESPQHPYTKKLMAAVPVAD 550